Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01337 ATGGTTACGCAAGCTCAAAGAAAGGTTCAGTCTTCTAAGGAAATTCAGAAGAGTGCCAATAACATGGAGGGGTCAATTAGTTCTCTAACTCCGGAGATATCTCTTAGATGGGTTCCTGATGAGTCATGCAGGCCTAAAGTTGATGAAGCACCTGTTTTCCATCCTACTATGGAGGAATTTCAAGATGCACTTAGTTATATAGCAAAGATACGTCCTATAGCACAACGTTATGGCATATGTCGGATTGTTCCTCCACCTTGCTGGGCACCACCGTGTCTTCTAAAGGAAAAGCAGTTATGGGAGAACTCTAAGTTCTCTACAAGAGTGCAGCCAATCGAATTGCTACAGAAGAGGGAGCCTATGTGGAAAAAGTACATCGGTCAAAAGAGAAAGCGAAGAAGGCAACCAAAGTTGGGAACTTCTAGGAGAGCTCGACATTCAGTTTCAGAAGCTAATGCTTGTTTAGAATATGACAAGTTTGGTTTTAGTTCAGGACCAGACTTCACTCTATGTGATTTTGAGATCTACTCTAATCATTTTAAAGAAAGTTATTTTGGTATGAAGGATGGAGAGGGGGACACTGAAGCAACAAAAAATGAAAGTAAAAATAGATGGGAGCCCTCTGTGGATGATATTGAAGGTGAGTACTGGCGAATAATTGAGGCAGATAACATGGAGGATGTTGAGGTACTCTATGGTGCTGACCTGGAAACTGGACCATTTGGGAGTGGGTTCCCAAAGAAATCATCCAAATTGAGTGAGAGCACTTCAAGTCCGTATGCAGTGTCTGACTGGAACCTTAATAATTCTCCTCGACTGCCTGGTTCAGTGCTTTTTTACGAAAAAAGTGATATTTCAGGTGTCCTTGTGCCATGGTTGTATGTTGGCATGTGCTTTTCCTCATTCTGTTGGCATGTTGAGGATCATCACCTATATTCAATTAATTATCTGCACTCGGGTGCTCCAAAAGTATGGTATGGTGTTCCTGGAACCCATGCTTTAGCTTTAGAAGCGGCAATGAAGAAGCATTTATCTGACCTATTTGAGGAAGTACCGGGTTTACTCAATGAACTGGTTACTCAGCTATCTCCTTCCATTCTGAAATCAGAAGGCGTTCCTGTCCATCGCGTCGTTCAGCGTGCGGGAGAGTTTGTTATTACCTTCCCCAGAGCATACCACTCAGGATTTAATTGTGGCTTCAACTGTGCTGAGGCTGTGAATATAGCACCCTTTGATTGGCTAGAGTATGGCCAAGGAGCAGTCGAGCTATACAGTGAGCAACATAGAAAGTCATCTATATCACATGACAAATTATTAATAACATCAGCTAACAATGCAGTGCAAGCTCTCATGGAATTAGCAATTCATGGAAACGAAACTTCAGAAAATTTAAGGTTGAAGCATCTGTGCGGGAAAGACGGTGTACTTACTAAAGCAGTCAAGACGAGGGTACAGATGGAAGAAGAAAGAATGAGTCATCTTCCAGCTCATTTGAAGTTGCGCAAAATGTATAGTGATTTTGATATAACTGATGAGAAAGATTGTGTTACTTGCTTGTATGATTTATACCTATCTGCTGCTGGCTGTGGTTGCTCCCCGAGCCGTTATTCTTGTCTTAGGCACTCAAACTCACTTTGTTCTTGTGGGTTCGCTCATCGTTTTGTGCTGCAAAGGTACACCATAAATGAGTTGAATACACTGGTTCGAGCTTTAGAAGGCAATCTAGATGCTATTAACGAATGGAAGGATATATACTCAAAATTGGTTAATACTAATGAAATCAAGGTGGAGGATTTCAGTTGTATGGTCTTCGGGAAGAGAAGGGATGGAAAGTTGCATACTGGCAATGGTGATCATGACAAGGTGAGCGCAAATGCTGCTAAACTTAAGCACTCTTGCTCAAGTAGCGGAAGAACCAAGAAGCAACTTAATCACCTGCTGCATACCGGCACTGATATTGATGACAAAGTGGGTGCAAATGCTGCCAAACCAAAGGCTGATTACTCGACTAGGGGAAGAGCCAAAAATAATGCCTTCAGCTTTTCAGAGCCAGTTTCTGTGAAAAACAATGATGAAATGCTGCATACTGGCAATGGTGATGGTGACAGAGCAGGTGCAGATACTGCCACCCTGATTCCCTCTCACTTGGCCAGGAGAAGAGGCAATATGAAACTTAATGGTGCCTTGAGCATTCCAGAATCAGTATCTGTTCCAAATGAGAATGGAATGCAGCCAGAAGATGCTGGAGTATCTTCGTTGATTGAAGGTAAAAAGTTTTTTGAGTTTGGTCAGAAGCAAAAGCAGCCACATTTGGGAAGTGTTGCTCATCAGATAGATGACTATAGTATGAAGTTATCCGTCAGCAATCAAGACTATCTTCTGAAAACATTCACTCCCCATGTTGAGCTTTTAAGTCTCGGATCTTTTGTGCATAGCGAGAATTGGTGCAATAAGAATTTTATATTTCCAAAAGGTTTTAAAAGCCGTACAGAGTACTTCAATTTGCATGATCCGACGAAACTGGGTTTCTACATATCAGAAGTCCTTGATTCTGGAGTTCTTGGTCCTCTATTTAAGGTTAGCTTAGAAGAATGTCCAAGTGAGAGTTTTACAAACTTCTCTGCAGCGAAGTGCTGGGAATTGGTTCAAGAGAAGCTGAATATCAAAATATTAAATTGTAGTCATCTGGGGGTACCAGGATTGCCTCCTTTGCAGCCTTCAAATAGCATCAATGGTCTTGAAATGTTTGGCTTCCTTAACCCGCAAATTGTTCAGGAAATTGAAACTCTGGACAGGAATCATGAATGCAAAGAGTATTGGTCTTACAAGCAAGTTAACCCTGCGAGTGAGGGCACCAAGTTCCCTTGTAGATTGAGTAGCTCCTTAACTGAGGCAAATGCAGCAGCAGTTTTTAACATTGACTTGACGAGTCAGGATGAAGATAACCCATGTAGGGAAGGAGTTGACTATTCTTTGGAAGAGATGCAGTTGAAGGTATTAGAATTGTTGAAGAAGGCAAGTCCTCATGAGTTAGATACCATGCACCAGGTATTTAGCAGCGAGTCTCTCAATGATGAGTGGAGGAAGAGGTTTCTAGCGATGATTGAGGAAATTCACAAGAAAATGTAA 3129 0.418 MVTQAQRKVQSSKEIQKSANNMEGSISSLTPEISLRWVPDESCRPKVDEAPVFHPTMEEFQDALSYIAKIRPIAQRYGICRIVPPPCWAPPCLLKEKQLWENSKFSTRVQPIELLQKREPMWKKYIGQKRKRRRQPKLGTSRRARHSVSEANACLEYDKFGFSSGPDFTLCDFEIYSNHFKESYFGMKDGEGDTEATKNESKNRWEPSVDDIEGEYWRIIEADNMEDVEVLYGADLETGPFGSGFPKKSSKLSESTSSPYAVSDWNLNNSPRLPGSVLFYEKSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSINYLHSGAPKVWYGVPGTHALALEAAMKKHLSDLFEEVPGLLNELVTQLSPSILKSEGVPVHRVVQRAGEFVITFPRAYHSGFNCGFNCAEAVNIAPFDWLEYGQGAVELYSEQHRKSSISHDKLLITSANNAVQALMELAIHGNETSENLRLKHLCGKDGVLTKAVKTRVQMEEERMSHLPAHLKLRKMYSDFDITDEKDCVTCLYDLYLSAAGCGCSPSRYSCLRHSNSLCSCGFAHRFVLQRYTINELNTLVRALEGNLDAINEWKDIYSKLVNTNEIKVEDFSCMVFGKRRDGKLHTGNGDHDKVSANAAKLKHSCSSSGRTKKQLNHLLHTGTDIDDKVGANAAKPKADYSTRGRAKNNAFSFSEPVSVKNNDEMLHTGNGDGDRAGADTATLIPSHLARRRGNMKLNGALSIPESVSVPNENGMQPEDAGVSSLIEGKKFFEFGQKQKQPHLGSVAHQIDDYSMKLSVSNQDYLLKTFTPHVELLSLGSFVHSENWCNKNFIFPKGFKSRTEYFNLHDPTKLGFYISEVLDSGVLGPLFKVSLEECPSESFTNFSAAKCWELVQEKLNIKILNCSHLGVPGLPPLQPSNSINGLEMFGFLNPQIVQEIETLDRNHECKEYWSYKQVNPASEGTKFPCRLSSSLTEANAAAVFNIDLTSQDEDNPCREGVDYSLEEMQLKVLELLKKASPHELDTMHQVFSSESLNDEWRKRFLAMIEEIHKKM* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01337 1042 Pfam jmjN domain 51 84 IPR003349 -
Pte2g01337 1042 Pfam F/Y rich C-terminus 855 939 IPR003889 GO:0005634
Pte2g01337 1042 ProSiteProfiles FYR domain FYRC motif profile. 853 943 IPR003889 GO:0005634
Pte2g01337 1042 Gene3D Cupin 35 409 - -
Pte2g01337 1042 SMART JmjN_1 49 90 IPR003349 -
Pte2g01337 1042 Gene3D - 798 937 - -
Pte2g01337 1042 SMART cupin_9 259 425 IPR003347 -
Pte2g01337 1042 Pfam JmjC domain, hydroxylase 292 407 IPR003347 -
Pte2g01337 1042 SMART fyrn_3 807 851 IPR003888 GO:0005634
Pte2g01337 1042 SMART fyrc_3 857 949 IPR003889 GO:0005634
Pte2g01337 1042 Pfam F/Y-rich N-terminus 801 848 IPR003888 GO:0005634
Pte2g01337 1042 SUPERFAMILY Clavaminate synthase-like 255 446 - -
Pte2g01337 1042 ProSiteProfiles JmjN domain profile. 50 91 IPR003349 -
Pte2g01337 1042 ProSiteProfiles JmjC domain profile. 259 425 IPR003347 -
Pte2g01337 1042 Pfam C5HC2 zinc finger 515 567 IPR004198 -
Pte2g01337 1042 ProSiteProfiles FYR domain FYRN motif profile. 793 851 IPR003888 GO:0005634
Pte2g01337 1042 MobiDBLite consensus disorder prediction 1 23 - -
Pte2g01337 1042 PANTHER LYSINE-SPECIFIC DEMETHYLASE 43 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01337 Pte-Chr2 17328152 17334565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01337 801 975 JUMONJI Transcription Factor Family AT1G30810 48.295 4.01e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte2g01337 JmjC 5.1e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01337 K11446 - qsa:O6P43_013230 1020.76