Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01317 ATGGCGCAACAGTCATCTCGGCTTCATCGCTTACTCACTCTATTGGACACTGGATCAACTCAAGCGACAAGGTTGACAGCTGCACGTCAAATTGGTGATATTGCAAAATCACATCCTCAAGATTTGCAATCTCTATTGAAGAAGGTGTCTCAATATCTTCGTAGCAAAAACTGGGACACTCGAGTTGCAGCTGCTAATGCTATTGGAGCCATTGCAGAAAATGTTAAGCACAGAAACATGGCTGAACTTCTTGCTTCTATTGAATCAAAAATGTCTGATAATGGTGTAGCTGGCAGTGCTGAAGATGTAATTGCATGGCCTTATCTTCAATCTAAAATCTTTGGGAACTCATTCCAAAGCTTTGATGTGAATAAGGTTCTTGAATTTGGTGCTTTATTGGCATCTGGAGGACAGGAGTTCGACATTGGTATTGATAATTTGAAAAATCCAATGGAAAGGTTGGCCCGTCAGAAGCAAAATCTTCGCCGCCGATTGGGTTTGGACGTCTGTGAGCAGTTTATGGATATCAATGACATGATTCGTGATGAAGACCTTATTGTACATAAATCTACTTCAAATGTGAATGAAATTGATCGGAGACTTTTTTCATCTCATGCTGTAAATAACATCAGGAAAATAGTCACAAATATTGTTCCTGGAGTCAAGTCCACTAGACCCAGTGCCAGACAATTGAACCTTCTAAAACGCCAAGCAAAAATAAACTCAAAAGACCAGACAAAAACATGTGAAGATGGGAATGCAGAAGCATTGTGTGGTCAAAATACTGTAGTTCCACGAGGCATGTCTCATGAAGCAGATAGTAAGGAAACTGTGGAGGTTAATCACGAAGAACACAGCTTTGAACAAAGTGGAGATGGACAGTGGCCGTTCCACAGTTTCGTTGAGCAGCTTATTCTTGATATGTTTGATCCTGTGTGGGAGGTTCGTCATGGCAGTGTTATGGCTTTGAGAGAAATTTTGACACATCAAGGTTCTTCTGCCGTATTATCAATACCTCATTCAAATTTGGCTGGGGCATTATTTGTTGAATCAGAAAGTAAGGGTATGCCAAATACACTGAAGAGAGAAAGAGAAATTGATTTAAATATGCAAGTTTTGGTGGATGAGTCTGTCTCTCTCTCGAAGAAGCCAAAGTTGGAGGTTGAATCACCAGCATCTGCAGGTTTCATGGTTTCTGGCAGCGACAATGGTTATGGAGAAACTTGTGGGTGGAGCTATTCATTCTATCAGGACAATGACCCACCTTCCGGTGATTCCTTTGATGTCATGTCTGAATCTTATGCTGGCAGTTTCTGTTACTCATATGATGGACCAGTTAATGGTGGAGAGCCCAAGTTTTCAGATGAAGAGAATATGATGCATCCTGAAATTCCGAAGGTGCTGAGTAATTTTCCTGATGATAGTGAATTGGTGAAGTTAATCAAACTTGCTAGAAGTTATTGGCTTCGAAACTGTGAATTCCTTCAAGATTGTGTAATTCGCTTCTTGTGTGTGCTGTCTCTTGACCGTTTTGGAGATTATGTATCAGATCAAGTTGTTGCCCCTGTTCGTGAAACCTGTGCGCAGGCGTTAGGTGCTGCATTTAAGTACATGCATCCCACGTTGGTGAGAGAAACTATGAATATATTGCTTAAGATGCAGTGTAGACCTGAATGGGAGATTCGTCACGGGAGCCTTTTAGGCATCAAGTACTTGGTTGCTGTGCGGCAGGAGATGCTCCGTGATCTGCTTGTTCGCGTTCTTCCTGCATGTAAATCTGGGTTAGAGGATCCAGATGATGATGTTCGTGCAGTTGCCGCTGAAGCTCTGATACCAGCTGCAGCAGCAATTGTTGCTTTAAATGGTGATACATTACATTCTATTGTTATGTTACTTTGGGACATATTACTCGATTTGGATGATTTAAGTCCATCTACAAGCAGTGTAATGAATCTTTTGGCAGAAATATATTCTCAGGAGGAGATGATACCCAAGATCTCTGAGGCGTACCTTATGAAAGGTACACAAGGGTCTTACCTGAATGAGATTGGTCATGTTGGTGATAGTGGAGAAGAGAGTCCCTACTCCCTTTCAGCTTTGGCTCCCCGGTTGTGGCCATTCATGAGGCACAACATTACAACTGTCCGCTTCGCTGCAATTCGCACATTGGAGCGGCTGCTTGAAGCAGGATATAAGAGGAGCATATCTGAGTCATCTATTGCTTCATTTTGGCCTTCTAACATACTGGGCGATACTCTGAGAATTGTCTTCCAGAATTTGCTTCTGGAATCAAATGAGGAAATTCTACAATGTTCTGAGAGAGTTTGGAGACTTCTTATTCAGTGCCCAGTAAATGATTTGGAGATAGCTGCAAGATCTTACATGTCTTTTTGGATTGAGCTGGCATCCACACCTTATGGTTCAGCTCTAGACGCCTCAAAAATGTTCTGGCCTGTTGCCCTTCCACGAAAAAGTCATTTCAGAGCAGCAGCTAAAATGAGAGCTGCAAAGTGTGAAAATGAATTTTCAAGAGATGTTATTGATCCGAGCACTGGAGCTGTTCCTCAAGAAAGAAATGGGGATATTTCTTTGAGTTCTGTGAAGATAATTGTTGGTAGTGATTCAGAAGTTTCTGTAACACAAACACGAGTCGTTGCAGCTTTTGCTTTAGGAATATTTGCTTCAAAGCTACTGCAGGGATCTTTCCCATATCTAATTGATCCACTATGGCATTCTATTACCTCTTCATCTGGGGTGCAGCGGCAGGTTGCTGCCATGGTTCTTATTTCATGGTTCAAAGAGATCAAAAGCATCAATCAGTTCACATCACCCGGGGATACTCCTGGTTTTCCAAATTATTTGAAGCAGTGGTTACTGGACTTATTAGCTTGTGCTGACCCAGCATTCCCGACAAAAAATTCGCTCCTTCCTTATTCTGAGCTTTCAAGAACTTACTCAAAGATGCGGGGTGAGGCTGGTCAGTTGCTAAATGCTGTAAAGTCATACAGTATTTCCAGCGATGTATTGTCAACGGCTGCTATTGACTTAGAGAAGTTGACTGTTGATGAAGCAATAGCTTTTTCATCAAAAGTTTCAAACTTATGCATTGATAATTCTAGGAGTGAATCCGTGGGTGGCAGCACTGCTGTTAATGTTGAGTCTTCAAAACAACGACTTTTGACAACTTCAGGATATTTAAAATGTGTTCAGAATAATTTGCATCTTACTGTTACTTCTGCAATTGCTGCTGCAATTGTCTGGATGTCAGAGTTTCCTGCACGATTGAATCCAATTATTTTACCCTTGATGGCTTCAATCAAAAGAGAACAGGAGGAAATACTTCAAGAAAAGTCAGCAGAGGCTCTTGCTGAACTTATTTATCATTGTACATCACGTAAACCTGGTCCAAATGATAAGTTAATCAAGAATATTTGTGCTTTAGCGTGCATGGATCCCTCAGAGACTCCCCAAGCGAAACTCATTAGTTCCATGGAAAGCATTGATGAACAAGGTCTGTTGTCTTTTGGAAAATCTATGGGTAAACAAAGACAAAAGGTCCATATGATGGCTGGTGGGGAAGATCGGTCCAGGGTTGAAGGCGTCATTAGCAGACGGGGAGCTGAACTGACTTTAAGGCATCTGTCTCAGAAATTTAACTCTTCGTTATTCGATAAGCTTCCTAAATTGTGGGACTGTCTCACTGAGGTTCTCAAGCCTAGCTTTGAGGAATCTCTGGATTCCGCAGATGATACTCAAATTACATTGGCTATCGAGTCTGTTAAGGATCCTCAGATATTAATTAACAATATCCAGCTCATACGTTCCGTTGCTCCAGTACTAGATGAGGCATTAAAGCCTAAGTTGCTGATGCTTCTGCCAAGTGTTTTCGGATGTGCCAAGCATCCCCATGTTGCTGTTAGATTAGCTGCTGTGCGTTGCATTACTTCAATGGCTAGGTCTATGACTGTGAAAGTTATGAGAGCGGTAGTGGAAAATGCTATTCCTATGTTGGGGGATGCATCGTCAGCTCATGCACGACAAGGTGCTGGGATGCTTATTAGCCTTCTTGTTCAGGGGTTAACAGTTGAGCTAGTCCCATATGCTCCTTTGTTAGTGGTTCCTCTTCTCAGGTGTATGAGTGATTGTGACCAATCTGTTAGACAAAGTGTGACACACAGTTTTGCTACTCTTGTTCCCCTTCTTCCCCTTGCACGCGGTCTGCCTCCACCTTCTGGTTTGGATGAAAGTTTATCTAGGAATACTGAAGATGCTCGGTTCCTAGAGCAACTGCTTGACAACTCTCATATTGATGACTACAAGCTGTTAACAGAATTGAAAGTAACATTGAGAAGTTATCAACAGGAGGGTATAAATTGGCTGGCTTTCTTAAAGCGCTTCAAGCTTCATGGTATACTATGTGATGATATGGGGCTTGGGAAAACGCTTCAAGCATCTGCTATTATGGCATCTGACATAGTTGAACGTCGCAATCTCAATGGCAATGTTGATCTTGTACCGTCTATAATAGTTTGCCCTTCAACGCTTGTGGGGCATTGGGCCTTTGAGATAGACAAATATATAGATGCTTCTGTAATATCTACTCTTCAATATGTTGGTTCTGCTCAGGAGAGAGTACAACTTCAAGATTACTTAAGCAAGCATAGTGTAGTTATAACATCGTACGATGTAATCCGAAAAGATATTGATTACCTAGGGCAGCTTTCATGGCATTACTGTATACTGGATGAAGGGCATATAATCAAGAATGCTAAGTCAAAAATAACTCTTGCTGTGAAGCAGTTGAAAGCCCAACATCGGTTAATATTGAGTGGGACACCAATCCAGAACAACATAATGGATCTGTGGTCTCTTTTCGATTTTCTAATGCCAGGATTTCTTGGTACAGAGAGACAGTTCCAAGCTACTTACGGAAAACCACTTCTTGCAGCAAGAGATCCCAAGTGTTCAGCCAAAGATGCTGAAGGTGGGGTACTAGCTATGGAAGCATTACATAAGCAGGTCATGCCATTCCTTCTTCGGCGAACGAAGGACGAAGTCTTGTCGGATCTGCCTGAAAAAATCATTCAGGACAGATACTGTGATCTGAGTCCTGTGCAACTAAAACTTTATGAACAGTTTTCTGGTCCTTGTGTAAAGGAAGAAATCTCATCGATTGTAAAAGTAAAAGATTCTGGAACAACAGAAGGAAGTAGCAGCGCACCTAAAGCATCTTCACATGTTTTTCAGGCACTTCAATATTTGTTAAAACTTTGTAGCCATCCTTTGCTCGTCTTGGGGGAAACAGTTACAGATTCAGTATCCAGCATTTTGTCGGATCTTCTTCCAGCAGATTGTGACATCAGTGCTGAACTTCACAAATTGCATCACTCTCCAAAGCTAGTTGCTTTGCAAGAGATACTAGAAGAGTGTGGAATTGGCATAGATGCTTCAAGTTCTGAGGGTGGCATTTGTGTTGGGCAGCATAGAGTCTTGATATTTGCACAGCATAAAGCTTTGTTAGACATCATTGAGAGAGATTTGTTTCACACGCACATGAAAAATGTTGCATATTTGCGATTGGACGGATCTGTTGAGGCAGAAAAACGATTTGATATTGTTAAAGCTTTTAATTCTGATCCTACAATTGATGCCTTGTTGCTTACAACGCATGTTGGTGGTCTTGGTTTGAACCTGACGTCAGCGGACACACTCATTTTCATGGAGCATGACTGGAACCCAATGCGCGACCATCAGGCTATGGACAGAGCACACAGATTAGGGCAACAAAAAGTTGTTCATGTCCACCGTCTCATAATGCGTGGTACTTTGGAGGAGAAAGTAATGAGCCTTCAGAGGTTTAAACTATCTGTAGCTAATGCTGTTATTAATGCTGAGAATGCCAGTATGAAAACCATGAATACAGATCAGTTGCTTGACTTGTTCGCTTCTGTGGAAACATCCAAAAAGGGTGCATCCTTTTCGAAGTCTTCTGACCAAAAACTGGAGGGAGACTCAAAATTGGTGGGCACCGGTAAAGGACTAAAAGCAATCCTGGGTGGATTGGAAGAGCTATGGGATCAGTCTCAATATGCAGAAGAATACAATCTCAACCAATTTTTAGCGAAGCTCAATGGTTAG 6138 0.4181 MAQQSSRLHRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLQSLLKKVSQYLRSKNWDTRVAAANAIGAIAENVKHRNMAELLASIESKMSDNGVAGSAEDVIAWPYLQSKIFGNSFQSFDVNKVLEFGALLASGGQEFDIGIDNLKNPMERLARQKQNLRRRLGLDVCEQFMDINDMIRDEDLIVHKSTSNVNEIDRRLFSSHAVNNIRKIVTNIVPGVKSTRPSARQLNLLKRQAKINSKDQTKTCEDGNAEALCGQNTVVPRGMSHEADSKETVEVNHEEHSFEQSGDGQWPFHSFVEQLILDMFDPVWEVRHGSVMALREILTHQGSSAVLSIPHSNLAGALFVESESKGMPNTLKREREIDLNMQVLVDESVSLSKKPKLEVESPASAGFMVSGSDNGYGETCGWSYSFYQDNDPPSGDSFDVMSESYAGSFCYSYDGPVNGGEPKFSDEENMMHPEIPKVLSNFPDDSELVKLIKLARSYWLRNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPTLVRETMNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLRDLLVRVLPACKSGLEDPDDDVRAVAAEALIPAAAAIVALNGDTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKISEAYLMKGTQGSYLNEIGHVGDSGEESPYSLSALAPRLWPFMRHNITTVRFAAIRTLERLLEAGYKRSISESSIASFWPSNILGDTLRIVFQNLLLESNEEILQCSERVWRLLIQCPVNDLEIAARSYMSFWIELASTPYGSALDASKMFWPVALPRKSHFRAAAKMRAAKCENEFSRDVIDPSTGAVPQERNGDISLSSVKIIVGSDSEVSVTQTRVVAAFALGIFASKLLQGSFPYLIDPLWHSITSSSGVQRQVAAMVLISWFKEIKSINQFTSPGDTPGFPNYLKQWLLDLLACADPAFPTKNSLLPYSELSRTYSKMRGEAGQLLNAVKSYSISSDVLSTAAIDLEKLTVDEAIAFSSKVSNLCIDNSRSESVGGSTAVNVESSKQRLLTTSGYLKCVQNNLHLTVTSAIAAAIVWMSEFPARLNPIILPLMASIKREQEEILQEKSAEALAELIYHCTSRKPGPNDKLIKNICALACMDPSETPQAKLISSMESIDEQGLLSFGKSMGKQRQKVHMMAGGEDRSRVEGVISRRGAELTLRHLSQKFNSSLFDKLPKLWDCLTEVLKPSFEESLDSADDTQITLAIESVKDPQILINNIQLIRSVAPVLDEALKPKLLMLLPSVFGCAKHPHVAVRLAAVRCITSMARSMTVKVMRAVVENAIPMLGDASSAHARQGAGMLISLLVQGLTVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFATLVPLLPLARGLPPPSGLDESLSRNTEDARFLEQLLDNSHIDDYKLLTELKVTLRSYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIMASDIVERRNLNGNVDLVPSIIVCPSTLVGHWAFEIDKYIDASVISTLQYVGSAQERVQLQDYLSKHSVVITSYDVIRKDIDYLGQLSWHYCILDEGHIIKNAKSKITLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEGGVLAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGPCVKEEISSIVKVKDSGTTEGSSSAPKASSHVFQALQYLLKLCSHPLLVLGETVTDSVSSILSDLLPADCDISAELHKLHHSPKLVALQEILEECGIGIDASSSEGGICVGQHRVLIFAQHKALLDIIERDLFHTHMKNVAYLRLDGSVEAEKRFDIVKAFNSDPTIDALLLTTHVGGLGLNLTSADTLIFMEHDWNPMRDHQAMDRAHRLGQQKVVHVHRLIMRGTLEEKVMSLQRFKLSVANAVINAENASMKTMNTDQLLDLFASVETSKKGASFSKSSDQKLEGDSKLVGTGKGLKAILGGLEELWDQSQYAEEYNLNQFLAKLNG* 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01317 2045 Gene3D - 1088 1405 IPR011989 -
Pte2g01317 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1682 1982 IPR027417 -
Pte2g01317 2045 SMART ultradead3 1445 1642 IPR014001 -
Pte2g01317 2045 SMART helicmild6 1841 1927 IPR001650 -
Pte2g01317 2045 SUPERFAMILY ARM repeat 6 1489 IPR016024 -
Pte2g01317 2045 Gene3D - 501 730 IPR011989 -
Pte2g01317 2045 Coils Coil 144 164 - -
Pte2g01317 2045 Gene3D - 4 96 IPR011989 -
Pte2g01317 2045 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1461 1631 IPR014001 -
Pte2g01317 2045 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1817 1973 IPR001650 -
Pte2g01317 2045 Pfam Helicase conserved C-terminal domain 1827 1927 IPR001650 -
Pte2g01317 2045 FunFam TATA-binding protein-associated factor BTAF1 1196 1407 - -
Pte2g01317 2045 Gene3D - 1691 2006 IPR027417 -
Pte2g01317 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1422 1681 IPR027417 -
Pte2g01317 2045 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1419 1680 - -
Pte2g01317 2045 Gene3D - 1420 1680 IPR038718 -
Pte2g01317 2045 FunFam TATA-binding protein-associated factor 1691 2009 - -
Pte2g01317 2045 CDD SF2_C_SNF 1796 1938 - -
Pte2g01317 2045 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Pte2g01317 2045 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2044 IPR044972 GO:0003677|GO:0016887|GO:0017025
Pte2g01317 2045 Pfam SNF2-related domain 1467 1763 IPR000330 GO:0005524|GO:0140658
Pte2g01317 2045 Pfam Domain of unknown function (DUF3535) 775 1232 IPR022707 -
Pte2g01317 2045 CDD DEXHc_Mot1 1449 1681 IPR044078 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01317 Pte-Chr2 16183710 16207519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01317 1444 1982 RAD5 or RAD16-like Gene Family AT1G02670 27.036 2.10e-39 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte2g01317 DUF3535 6.9e-99 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01317 K15192 - gmx:100777977 2928.66