LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte2g01316	ATGAATAATCGACCATCTGAGTTAGGAACACCTGCATCAGGTAAAAGAAGACTGAAAGATCTGTTGCTTCAAAAGGATAATCGCTTTTGCGCAGATTGTGATGCTCCAGAACCAAAATGGGCATCTGCCAATATCGGAGTTTTTATATGCTTGAAATGCTGTGGTGTTCATAGAAGCCTTGGCCCTCATATATCTAAGGTCTTGTCTGTAGCACTGGATGAGTGGTCTGATGAAGATATTGATGCAATGATTGAAGTTGGAGGAAATGAGTCTGCAAATTCCATTTATGAAGCTTATATTCCTGAAGGATTTACTAAGCCAGGAAGAGATGCCAGCCATGATGTTCGCTTGAAATTCATCCGGTCAAAGTATGAGCTTCAAGAGTTTCTGAAACCCAACTTGCGGATAGTGTCCATGCGACCTGACAGGAGTTCTGCACGATCAAGTTTTTCAAATAAGATCTTGAGCAGTTTCCGAAGAAAAAGCACGAATGAAATTATGGAATACATGGCAGAATCAATTGGATTAATGAAGGTCAAAGTGATCAAAGGCACAAATTTGGCTGTAAGAGATATGATGACAAGTGATCCATATGTTGTTCTGACTCTAGGGAAGCAGACTGTTCAGACATCTGTTATTAAGAGTAACTTGAATCCAGTCTGGAATGAAGAGCGAAAGCTATATGTCCCTGAGGCCCATGGAACAATGAAGTTGCAAGTGTTTGATCATGACACATTCTCTGCGGATGACATAATGGGAGAAGCTGAGATTGATCTGCAGCCCATGATAGCATCTGCAACAGCCTATGGGGATGCAGGAATGTTTGCAGACATGCAGATAGGGAAATGGCTGAAATCAAATGACAATGCACTTATAGATGATAGCCCAGTCAGCATCGTTGAGGGTAAATTTAAACAGGAGATGTCACTCAAACTCCAGAATGTGGAATCTGGGGAGATATATGTAGAACTTGAGTGGACCCCTCATGAATCTTGA	996	0.4147	MNNRPSELGTPASGKRRLKDLLLQKDNRFCADCDAPEPKWASANIGVFICLKCCGVHRSLGPHISKVLSVALDEWSDEDIDAMIEVGGNESANSIYEAYIPEGFTKPGRDASHDVRLKFIRSKYELQEFLKPNLRIVSMRPDRSSARSSFSNKILSSFRRKSTNEIMEYMAESIGLMKVKVIKGTNLAVRDMMTSDPYVVLTLGKQTVQTSVIKSNLNPVWNEERKLYVPEAHGTMKLQVFDHDTFSADDIMGEAEIDLQPMIASATAYGDAGMFADMQIGKWLKSNDNALIDDSPVSIVEGKFKQEMSLKLQNVESGEIYVELEWTPHES*	332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte2g01316	331	CDD	C2_ArfGAP	174	318	-	-
	Pte2g01316	331	SMART	arf_gap_3	15	137	IPR001164	GO:0005096
	Pte2g01316	331	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	173	328	IPR035892	-
	Pte2g01316	331	Gene3D	C2 domain	170	331	IPR035892	-
	Pte2g01316	331	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	15	143	IPR001164	GO:0005096
	Pte2g01316	331	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	9	329	IPR044518	GO:0005096\|GO:0005543
	Pte2g01316	331	SMART	C2_3c	176	271	IPR000008	-
	Pte2g01316	331	FunFam	Arf-GAP with dual PH domain-containing protein 1	10	138	-	-
	Pte2g01316	331	CDD	ArfGap	18	124	-	-
	Pte2g01316	331	Pfam	Putative GTPase activating protein for Arf	16	131	IPR001164	GO:0005096
	Pte2g01316	331	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	132	IPR037278	-
	Pte2g01316	331	ProSiteProfiles	C2 domain profile.	158	272	IPR000008	-
	Pte2g01316	331	Gene3D	Arf GTPase activating protein	3	136	IPR038508	-
	Pte2g01316	331	PRINTS	HIV Rev interacting protein signature	27	46	IPR001164	GO:0005096
	Pte2g01316	331	PRINTS	HIV Rev interacting protein signature	67	88	IPR001164	GO:0005096
	Pte2g01316	331	PRINTS	HIV Rev interacting protein signature	46	63	IPR001164	GO:0005096
	Pte2g01316	331	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	173	331	-	-
	Pte2g01316	331	Pfam	C2 domain	177	263	IPR000008	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte2g01316	Pte-Chr2	16149102	16152284	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte2g01316	8	332	C2H2 Transcription Factor Family	AT4G21160	69.184	3.07e-173	482

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte2g01316	K12486		-	qsa:O6P43_013125	507.294