Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01271 ATGAAGATCCTTTGCGACGTGTGTGTGAGTGACGAGGCCTTGGTCTTCTGCACTGCCGACGAGGCAGCTCTCTGCAAGTCTTGTGACCATGGCGTTCATCATGTCAACAAGCTCGCCTCCAAACACCAACGCTTCTCTCTTCTCCAACCTTCTCCTAAGCAACTTCCTCTCTGCGATGTTTGCCTGGAGAGAAGAGCTTTCTTGTTCTGTCAGCAGGACAGAGCTATTCTGTGCAGAGAGTGCGATGAACCGATTCACTCTGCCAACGAACGTACCAAGAAACATGATAGGTTTCTTCTTACGGGAATGAGAGTCTCTGCTGCGGCTATGCTCGACTCGTCATCACACTCTGCTGCTAACGTTGTAGCTCATACCACTGATCCTGTTCCTCAGCATCCGGAGTCCCGACCTTCTGACAAGAGCTCATCCCTTTCTGGTGCTTCACCCGTAGCACATCCACCGATGTCTGCTAAAGCTGTTGACACGACAATCATGAACATCCCCACCAACAAGGCTGTTGGAAATGCCATAGATGAAACTGCAGGTATAGATGGTACAGGAAGTTGCATAGCGGAGTACTTGATAGAGACTCTTCCTGGTTGGCACGTTGAGGACTTCCTAGATTCATCTGCTACTCCGTCTGGCTTCTACAGCAAGGTTTTCGAGGATGAATATCTCACTAATTTGCGTTTTATCATATATATCATTTGTTAA 714 0.4832 MKILCDVCVSDEALVFCTADEAALCKSCDHGVHHVNKLASKHQRFSLLQPSPKQLPLCDVCLERRAFLFCQQDRAILCRECDEPIHSANERTKKHDRFLLTGMRVSAAAMLDSSSHSAANVVAHTTDPVPQHPESRPSDKSSSLSGASPVAHPPMSAKAVDTTIMNIPTNKAVGNAIDETAGIDGTGSCIAEYLIETLPGWHVEDFLDSSATPSGFYSKVFEDEYLTNLRFIIYIIC* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01271 237 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pte2g01271 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte2g01271 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 211 - -
Pte2g01271 237 Gene3D Classic Zinc Finger 1 101 - -
Pte2g01271 237 MobiDBLite consensus disorder prediction 131 149 - -
Pte2g01271 237 CDD Bbox1_BBX-like 57 100 - -
Pte2g01271 237 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Pte2g01271 237 FunFam B-box zinc finger protein 21 1 98 - -
Pte2g01271 237 CDD Bbox1_BBX-like 4 47 - -
Pte2g01271 237 MobiDBLite consensus disorder prediction 126 155 - -
Pte2g01271 237 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pte2g01271 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01271 Pte-Chr2 14433181 14434072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01271 1 224 C2C2-CO-like Transcription Factor Family AT1G75540 51.101 1.56e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte2g01271 zf-B_box 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01271 - - jre:108984911 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00870 14 30132735 30134954 Pte2g01271 2 14433181 14434072 RCT
Pte2g01271 2 14433181 14434072 Pte2g01271 2 14433181 14434072 RCT
Pte3g01864 3 29692700 29693835 Pte2g01271 2 14433181 14434072 RCT