Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01248 ATGGAGTCTGGCGACCATTGCAAGTCTGATTGTTTACTAATGACAATGGATTTCAAAAGCATCGTACGTGAGCTCAGGGCGATGAGATATAATGTGGGAAACATATCCAGAAGAGGTGTGGCCGGAAAATGTATCACTCGCAAGGGAAAATCTCATATTGCACCAGAATGGTCCTCAACATCCCCGCCGTTAGAGGCACCTTCGATGTACCTGCAGCTTCAGCAGAGTGGCTGGGCCTGCTTACCACCTGAGTTGCTTTCAGATATAATCCAAAGGGTGGAAGCTAGTGAGACTTCGTGGCCGGGCCGAAGGGCTGTTGTGGCTTGTGCATCAGTTTGCAGGTCTTGGAGACAGGTGACCAAGGAGGTTGTCAAAGCACCAGAGCAGTGTGGATGGCTCACCTTCCCTATATCACTGAAGCAGCCTGGGCCAAGAGACGTTCCAATTCAGTGCTTTATTAAGAGGAACAGAGCAACTTCAACATTTCAACTGTATCTTGGCCTGAGTCCTGCTCTTTCTGGGGACTCAAGTAAGTTGCTTCTAGCAGCCAAGAAAATTAGAAGAGCGACACTTACAGACTTCTTAATATCCTTGGCTGCAGATGAATTCTCGCGAACAAGCAACACCTACGTTGGAAAACTTCGGTCTAATTTCCTGGGGACCAAGTTCACAATCGTTGATAAACAGCCTCCCTCGAATCACCTGCGTCATTTGAACTCTAACTCGCAGAAACAAATCACGCGCAAGAATCTCCATACAAGAAATTCTGCTGCTAAACACAACGTGGGCACTATATCTTATGAGCTAAATGTTCTCCGTACCAGAGGTCCGAGGAGAATGTGGTGTGTCATGCATTCTACGACAGCGCAAGCAAGCCAAGCAGGGGTCACTGCTCCTGCTCCCATGGAACGCACTTATTGGAACAATGAGCAATTATCTACCACGTCTGTCTCGAGTAAAAGTAATCTGATTGCTAATTGTAGTTCCAGTAGTGCAATAGAGCAATTTGAATCAACCCACATCACGAAACGTCCCCTGATTTTGAAAAATAAAGCTCCAAGATGGCATGAGCAGTTGCAATGCTGGTGCCTAAATTTCAAAGGACGAGTTACAGTAGCCTCAGTGAAGAATTTCCAGCTTGTAGCAGCTGCAGAATCTAATTCAGATACTTCAGTGACAGAACAAGATACGGTGATACTGCAATTTGGAAAAATTGGGAAAGACATATTCACCATGGATTACCGATACCCTCTTTCAGCATTTCAAGCCTTTTCTATCTGCTTGAGCAGCTTCGACACTAAACCAGCTTGTGAATAG 1317 0.4579 MESGDHCKSDCLLMTMDFKSIVRELRAMRYNVGNISRRGVAGKCITRKGKSHIAPEWSSTSPPLEAPSMYLQLQQSGWACLPPELLSDIIQRVEASETSWPGRRAVVACASVCRSWRQVTKEVVKAPEQCGWLTFPISLKQPGPRDVPIQCFIKRNRATSTFQLYLGLSPALSGDSSKLLLAAKKIRRATLTDFLISLAADEFSRTSNTYVGKLRSNFLGTKFTIVDKQPPSNHLRHLNSNSQKQITRKNLHTRNSAAKHNVGTISYELNVLRTRGPRRMWCVMHSTTAQASQAGVTAPAPMERTYWNNEQLSTTSVSSKSNLIANCSSSSAIEQFESTHITKRPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAESNSDTSVTEQDTVILQFGKIGKDIFTMDYRYPLSAFQAFSICLSSFDTKPACE* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01248 438 ProSitePatterns Tub family signature 1. 366 379 IPR018066 -
Pte2g01248 438 Gene3D - 72 124 - -
Pte2g01248 438 Gene3D Tubby Protein; Chain A 136 438 IPR025659 -
Pte2g01248 438 SUPERFAMILY Tubby C-terminal domain-like 127 438 IPR025659 -
Pte2g01248 438 PRINTS Tubby superfamily signature 210 234 IPR000007 -
Pte2g01248 438 PRINTS Tubby superfamily signature 348 365 IPR000007 -
Pte2g01248 438 PRINTS Tubby superfamily signature 416 438 IPR000007 -
Pte2g01248 438 PRINTS Tubby superfamily signature 395 414 IPR000007 -
Pte2g01248 438 PRINTS Tubby superfamily signature 366 382 IPR000007 -
Pte2g01248 438 PRINTS Tubby superfamily signature 259 286 IPR000007 -
Pte2g01248 438 PRINTS Tubby superfamily signature 194 210 IPR000007 -
Pte2g01248 438 PANTHER TUBBY-RELATED 43 436 - -
Pte2g01248 438 Pfam Tub family 139 433 IPR000007 -
Pte2g01248 438 Pfam F-box domain 78 123 IPR001810 GO:0005515
Pte2g01248 438 SUPERFAMILY F-box domain 73 141 IPR036047 GO:0005515
Pte2g01248 438 CDD F-box_AtTLP-like 78 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01248 Pte-Chr2 13974925 13976963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01248 43 439 TUB Transcription Factor Family AT1G47270 60.750 1.39e-162 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte2g01248 Tub 1.2e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01248 K19600 - zju:107420271 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01248 2 13974925 13976963 Pte2g01248 2 13974925 13976963 RCT
Pte3g01375 3 11984952 11986851 Pte2g01248 2 13974925 13976963 RCT