Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01246 ATGACTTCAGAAAGATCTAGATCAAAGACAGAGCCTTTAGTGGCTGGAGCGCGTGCTGTTCGATACAGAGAATGTCAGAAAAAACATGCTGCCAGCGTGGGAGGAAAGGTCTTGGGCAGCTGCGGAGCGTTCATGCCTGGCAGCGAAGAAGGATCCATGGAAGCTCTGAAATGTGTTGCTTGCCTTGGTGGCAGCTCCATTAGAAACATGCTGGTTGCTAATGCACTTCAGCTCCCTCCGCCATTGCCGTCCCCGGCCACTATGTCACATCATCACCATCTCAACAGATTCTCAGCTGGGTTAACGTACTCTAACAGTACCCCACCTGCTATGATTCAACCAATGAATGTTGCGTTCGGTGGAAGCACCATGGGAGGAGGCGGGACCGAATCTTCAAGCGAAGAACTCAATTTGTTCCACTCCAATGCAGCGGCTGTGGTGTCCCCCACGCCGTTTGCTTTGCGTAAGAAGCGATTCCGGACGAAATTCACTCACGAACAGAAGGCGAGCATGCTGGAGTTTGTAGAGAAACTAGGTTGGAGAATTCAAAAGCAAAGTGAGGAACAGGTGTTCAAGGTTTGGATGCACAATAACAAGAACAACCTCATGAGGAAACATCTTGAAGGGAGTTACATGCAATCTCTGGACATATCTGATCCACAAGATCAGGATCAGAAGGGAGGAGAGGAAGAAGGGTAG 699 0.495 MTSERSRSKTEPLVAGARAVRYRECQKKHAASVGGKVLGSCGAFMPGSEEGSMEALKCVACLGGSSIRNMLVANALQLPPPLPSPATMSHHHHLNRFSAGLTYSNSTPPAMIQPMNVAFGGSTMGGGGTESSSEELNLFHSNAAAVVSPTPFALRKKRFRTKFTHEQKASMLEFVEKLGWRIQKQSEEQVFKVWMHNNKNNLMRKHLEGSYMQSLDISDPQDQDQKGGEEEG* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01246 232 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 201 - -
Pte2g01246 232 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 61 IPR006456 -
Pte2g01246 232 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Pte2g01246 232 SUPERFAMILY Homeodomain-like 154 202 IPR009057 -
Pte2g01246 232 Gene3D - 151 203 - -
Pte2g01246 232 Pfam ZF-HD protein dimerisation region 20 61 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01246 Pte-Chr2 13943999 13944796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01246 7 207 ZF-HD Transcription Factor Family AT2G18350 37.615 3.82e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte2g01246 ZF-HD_dimer 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01246 - - rcu:8288941 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01246 2 13943999 13944796 Pte2g01246 2 13943999 13944796 RCT
Pte3g01370 3 11926000 11927904 Pte2g01246 2 13943999 13944796 RCT