LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte2g01226	ATGACTTATGATTCTTTAAGGATCATGTTCGCCGTAGAGGATGGGAAACTCCGAGGTGGTCTCGGGGTAAAAAAGCGGCTGAGAGCTGATCTGAAAGCTTCAGCATTGATGAGAGAACGTGGGTTGTGGTTGGATCGTGATAAGAGATTAGTGGGTGCGATACCGGGCATCGAAATTGGCGATTTATTCTTTTTTAGGATGGAAATGTCTGTGATTGGATTGCATGGTCAACCTCAAGCCGGGATTGATTATCTGCCTGCAATTTATAGTTCAAGTGGGGAGCCAATTGCGACTAGTGTTATAGTTTTTGGTGGGTATGAGGATGATGTGGATAGTGGTGATGTGATAATCTATACTGGTAATGGGGGGCAGGATAATCATTCTAGACAATGCTTTCATCAGAAGCTAGAAGGTGGGAATCTTGCGATGGAGCGAAGTATGCATTATGGGATTGAAGTGAGAGTTGTTAGAGGGGTTAAATACCAAGGAAGTCAAACTACTAAGGTGTATGTGTATGATGGCTTATATAGGATCGTTGATTGTTGGTTTGATGTGGGCAAGTCTGGTTTTGGAGTTTACAAGTATAAGCTTTGGAGAATTGAAGGGCAACCTCAAATGGGTAGTGAAAGTCTTAGGACAGCTGCTAGTCTTAAGTCTAGACCATTGGAAGTCAAACCAAAGGGTTACCTTTCTTTGGATATGTCAAACAAAAAGGAAAATGTTCCTGTAAGGGTTTTTAACGATATAGATTCTAACCAGGAGCCTTTGAATTATAATTATGTTTGCCGGACTGCTTTCCCACCATTTGCATTTCATCAAAGTGGGGGTGGAAGTGGATGTAGTTGTCTTTCAAATTGTGGCGATGATTGCTTTTGTGCCTCGAAAAATGGAGGTGAGTTCCCTTATGATCGCAATGGATTCCTCGTGAGAGGGAAACCTGTTGTTTTTGAATGTGGTCCTTACTGTAGTTGTCCTCCACATTGTCGGAACCGGGTTACACATAAGGGGCTTAAAAATAGGTTGGAAGTGTTTAGATCTAGTGAAACAAGTTGGGGAGTTAGGTCCTTGGAGCTGATACATGCTGGTGATTTCATTTGTGAATATACAGGGGTTGTTTTGACAAGGGAGCAAGCGCAGATTTTATCAATGAATGGTGACAAGTTGATTTACCCAAATCGTTTTTCTGATAGATGGACTGAATGGGGTGATCTATCTCAGATATTTCCAGATTATGTCCGTCCTTCTTATCCATCAATTCCTCCGCTGGATTTTGCCATGGATGTTTCTAAAATGAGAAATGTAGCATGTTATATGAGCCATAGTTTAACTCCTAATGTGTTTGTTCAGCTTGTTCTGTTTGATCATAACAATTTAATGTTCCCTCATCTCATGCTGTATTAG	1401	0.4118	MTYDSLRIMFAVEDGKLRGGLGVKKRLRADLKASALMRERGLWLDRDKRLVGAIPGIEIGDLFFFRMEMSVIGLHGQPQAGIDYLPAIYSSSGEPIATSVIVFGGYEDDVDSGDVIIYTGNGGQDNHSRQCFHQKLEGGNLAMERSMHYGIEVRVVRGVKYQGSQTTKVYVYDGLYRIVDCWFDVGKSGFGVYKYKLWRIEGQPQMGSESLRTAASLKSRPLEVKPKGYLSLDMSNKKENVPVRVFNDIDSNQEPLNYNYVCRTAFPPFAFHQSGGGSGCSCLSNCGDDCFCASKNGGEFPYDRNGFLVRGKPVVFECGPYCSCPPHCRNRVTHKGLKNRLEVFRSSETSWGVRSLELIHAGDFICEYTGVVLTREQAQILSMNGDKLIYPNRFSDRWTEWGDLSQIFPDYVRPSYPSIPPLDFAMDVSKMRNVACYMSHSLTPNVFVQLVLFDHNNLMFPHLMLY*	467

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte2g01226	466	Pfam	SAD/SRA domain	51	203	IPR003105	-
	Pte2g01226	466	SUPERFAMILY	PUA domain-like	33	208	IPR015947	-
	Pte2g01226	466	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	466	IPR025794	GO:0016571
	Pte2g01226	466	ProSiteProfiles	YDG domain profile.	52	199	IPR003105	-
	Pte2g01226	466	ProSiteProfiles	Pre-SET domain profile.	278	336	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pte2g01226	466	FunFam	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5	34	216	-	-
	Pte2g01226	466	Gene3D	-	49	209	IPR036987	-
	Pte2g01226	466	Pfam	SET domain	351	463	IPR001214	GO:0005515
	Pte2g01226	466	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	26	466	-	-
	Pte2g01226	466	ProSiteProfiles	SET domain profile.	339	466	IPR001214	GO:0005515
	Pte2g01226	466	Gene3D	SET domain	210	466	IPR046341	-
	Pte2g01226	466	SMART	preset_2	231	323	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pte2g01226	466	SMART	set_7	339	466	IPR001214	GO:0005515
	Pte2g01226	466	Pfam	Pre-SET motif	234	331	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pte2g01226	466	SUPERFAMILY	SET domain	223	466	IPR046341	-
	Pte2g01226	466	SMART	G9a_1	47	203	IPR003105	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte2g01226	Pte-Chr2	13590944	13593906	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte2g01226	1	466	Su(var)3-9 homologs	AT5G04940	38.771	1.40e-98	308

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Pte2g01226		SAD_SRA	2.3e-46	CL0178

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte2g01226	K11420		-	qsa:O6P43_003131	745.347