Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01220 ATGGAAAAGGACAAGTTCTTTGTGGATGAAAGAGGTAACACTACCCCACCACCCACTTGGAACATTTGTACGTTTGCCATGGAAAAAATCCAACCCAATGAACTGAATTGTGGTAGTGGCAGCAATTTTTTCCTCAATCCCCATTGGGGAAGTTCAGTGGATCAAAGTGATCCCTTTGAGTCTGCATTGAGTTCCATCGTATCTTCTCCGGCAACATCTAACGCCGGAGTCATCAGTGCCGGTGGCGGTGACAGTGTTATGATAAGAGAACTTATAGGAAAGTTAGGAAACATTTGCAACTCTGGGGATCTTTCTCCTCAGTCTTACATTGCAAGCAACGGCAACCAGAGCACTAACGCATCTTGCTACAGTACACCATTGAATTCCCCTCCAAAACTCAACCTTTCAACTATGGATTCACAGATCAAAGGCAGTATCCCAATTCCAAAGAATCATTTACCTTCTCATCCAAACTTAGTAACTTTTTCTACAGAGGGCAGCAAGATTCTCCTGTTTTGGAACGGGGAATTTGAGTGGCATACACGGGAATTTGGCACGTCCTCAGTTGCCTTACAGATCGACTCCAGCTCTCAGGACAACAATAGGAGATTGACACATGAAGCAAATATACTATCCAGGTCCTCTACCCCTGAAAATGGTGAATTCCGAGAATCTGCGGAAGGATCTCTTCAATCTGAACGGACCCCAGGTGGTGAATTGAGCACCAAAGGTGAAAGTGATTCAGGTTCTAGGAAAAGGAAATCAATTCCAAAGGGAAAATCAAGAGAGACCACTCATTCTCCCTCTGCTAAAGATAACAAGGTTGGAGTTGAGACTGAAGAATTCAATTCCAAGAAAAGGAAATCAGATGAAGCTACTGGGAATGATGCTGCAAAGGCAAAAGTAGAAGCAGAGTCAAATGCAAGGGAAGGAGATGAGAAGCAGGATAAGGATAGCCCAAAACCTCCTGAGCCTCCAAAAGACTATATTCATGTTAGAGCCAGAAGGGGTCAAGCTACAGATAGCCATAGTCTCACTGAAAGGGTCCGAAGAGAGAAAATCAGCGAAAGAATGAAGTTTCTTCAGGACCTTGTCCCTGGTTGCAACAAGGTAACAGGAAAGGCAGTTATGCTAGATGAAATAATAAACTATGTGCAATCGTTGCAGCGTCAGGTTGAGGTAATTCAGCTTATACTAAAGTATTATTGGTCTCAGCTGCAAGCTGAAGAGCAGCTTTATTGTCACACAACAAGTCAATAG 1260 0.4349 MEKDKFFVDERGNTTPPPTWNICTFAMEKIQPNELNCGSGSNFFLNPHWGSSVDQSDPFESALSSIVSSPATSNAGVISAGGGDSVMIRELIGKLGNICNSGDLSPQSYIASNGNQSTNASCYSTPLNSPPKLNLSTMDSQIKGSIPIPKNHLPSHPNLVTFSTEGSKILLFWNGEFEWHTREFGTSSVALQIDSSSQDNNRRLTHEANILSRSSTPENGEFRESAEGSLQSERTPGGELSTKGESDSGSRKRKSIPKGKSRETTHSPSAKDNKVGVETEEFNSKKRKSDEATGNDAAKAKVEAESNAREGDEKQDKDSPKPPEPPKDYIHVRARRGQATDSHSLTERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEVIQLILKYYWSQLQAEEQLYCHTTSQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01220 419 MobiDBLite consensus disorder prediction 208 330 - -
Pte2g01220 419 CDD bHLH_AtBPE_like 328 399 - -
Pte2g01220 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 388 IPR011598 GO:0046983
Pte2g01220 419 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 229 397 IPR024097 GO:0006355
Pte2g01220 419 FunFam Basic helix-loop-helix transcription factor 335 407 - -
Pte2g01220 419 Pfam Helix-loop-helix DNA-binding domain 342 389 IPR011598 GO:0046983
Pte2g01220 419 MobiDBLite consensus disorder prediction 208 244 - -
Pte2g01220 419 Gene3D - 335 412 IPR036638 GO:0046983
Pte2g01220 419 SMART finulus 344 394 IPR011598 GO:0046983
Pte2g01220 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 399 IPR036638 GO:0046983
Pte2g01220 419 MobiDBLite consensus disorder prediction 245 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01220 Pte-Chr2 13556321 13562561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01220 46 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 44.837 2.74e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte2g01220 HLH 8.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01220 - - qsa:O6P43_023609 431.795