Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01218 ATGGAGACGAGGAAGAAAAATAAGGAAAGGAAAGTGGTTACTGAAGCTATTTCTTCTAGAAATGGGGAATCTGAGAAGAAACAGAAGAGGTGTGGGGTGCCTAAAAGAAAGGTGTATTATAAGAAAGTGGTATATGACGGGGGAGTATTTGAGGTAGGCGATAGTGTGTATGTGAAGAGGAGGGAAGATGCAAGCTCAGATAACGAGGACCCTGAAGTTGAAGAATGTAGAATGTGCTTTGAGTCCGGGGATGATGTCATGCTCGAGTGTGATGATTGTTTAGGTGGATTTCACTTAAAATGTTTGAAACCGCCGTTGAAGGAAGTTCCAGAAGGGGATTGGATATGCGGATTTTGTGAGGCTCGAAAAGAGGGTAGGCACATGAGCTTTCCTGTGTGTCCGGAGGGGAAGAAAAGAGCCAGAACACTGAGGGAGAAGCTTCTTTCAAGTGATTTGTGGGCCGCACGCCTTGAAAGTATATGGAAAGATGTAGATGGAAGCTACTGGTGTCGTGCACGGTGGTACATAATTCCTGAAGAGACTGCAACTGGGAGACAAGCTCATAACCTGAAAAGAGAGATTTATCGCACAAATGATTTTGCTGACGTGGAGATGGAATCAGTTCTTAGGCATTGCAGTGTTTTGTCTCCTAAAGAATATGCGAAGGCTACGGATGCAGGAGATGATGTTTTCTTATGCGAATATGAATATGATGTTCGCTGGCGCAGCTTTAAGCGCCTTTCTAAGCTTGATGATGAAGAAGAAGGTGATGATGATTCTGACAGTGATGAAGATTGGAAACTGGCCAAGCACAAAGATTTTGATGGAGATGAAGACAATGAATACGATGAGGAGAATATTAAAAATCTACCATTTCAATCACGCTCAAATCATGAACTACCAGCAAATTTGTGGAAAGGAAAGTTATTCGGACTTCAAAAAATAGGTATCAAGAAAATTCCAGATCATGTGAGATCTCACAAGCCAACTGACCTTGAGAGAGCAAAGTCGGCATTGCTTTTGGCGTCAACACCTAAGTCTCTGCCTTGTAGGAATAAGGAATTGGAGGAAATAACTGCATTCGTAAGAAGTGCTGTGTGTGATGATCATTGTTTAGGGCGTTGCTTGTACATCCATGGTGTTCCTGGAACTGGCAAGACAATGAGTGTACTAGCTGTAATGAGGGCTCTAAGGTCTGAAGTAGAGGCAGGAACCATAAGACCATATTCTTTTGTGGAAACAAATGGTTTGAAGTTGGCATCTCCTGAGAATATATACAAGGTCATATATGAATCACTCAATGGGCACAGGGTGAGCTGGAAAAAGGCCTTGCACTTGCTGACTGAACGCTTTGTAAATGGTAAAAGAAAAAGAGAAGAGGATAGTCGCCCTTGTATACTGCTTATTGATGAACTTGATCTTCTTGTGACCCGAAATCAGTCGGTTCTGTATAACATTCTTGATTGGCCAACAAAACCACAATCCAAACTGGTGGTGATAGGTATAGCAAATACAATGGATCTCCCTGAGAAGTTACTTCCTCGTATTTCAAGTCGTCTGGGTATGCAGAGGCTCTGCTTTGGTCCATATAATTACCAGCAGCTTCAGGAAATCATCTCAAGTCGCCTTAATGGGGTCGATGCATTTGACAAGCTAGCCATAGAGTTTGCCTCGAGAAAAGTCAGTTATGAATCTCATCATAAACTAGTTTCTGATTCCTCTCCTTTCAGTGACTGA 1737 0.4243 METRKKNKERKVVTEAISSRNGESEKKQKRCGVPKRKVYYKKVVYDGGVFEVGDSVYVKRREDASSDNEDPEVEECRMCFESGDDVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFCEARKEGRHMSFPVCPEGKKRARTLREKLLSSDLWAARLESIWKDVDGSYWCRARWYIIPEETATGRQAHNLKREIYRTNDFADVEMESVLRHCSVLSPKEYAKATDAGDDVFLCEYEYDVRWRSFKRLSKLDDEEEGDDDSDSDEDWKLAKHKDFDGDEDNEYDEENIKNLPFQSRSNHELPANLWKGKLFGLQKIGIKKIPDHVRSHKPTDLERAKSALLLASTPKSLPCRNKELEEITAFVRSAVCDDHCLGRCLYIHGVPGTGKTMSVLAVMRALRSEVEAGTIRPYSFVETNGLKLASPENIYKVIYESLNGHRVSWKKALHLLTERFVNGKRKREEDSRPCILLIDELDLLVTRNQSVLYNILDWPTKPQSKLVVIGIANTMDLPEKLLPRISSRLGMQRLCFGPYNYQQLQEIISSRLNGVDAFDKLAIEFASRKVSYESHHKLVSDSSPFSD* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01218 578 ProSiteProfiles Zinc finger PHD-type profile. 73 122 IPR019787 -
Pte2g01218 578 Pfam PHD-finger 76 121 IPR019787 -
Pte2g01218 578 ProSitePatterns Zinc finger PHD-type signature. 76 119 IPR019786 -
Pte2g01218 578 Pfam ATPase family associated with various cellular activities (AAA) 377 520 IPR003959 GO:0005524|GO:0016887
Pte2g01218 578 Gene3D - 329 528 IPR027417 -
Pte2g01218 578 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 180 563 - -
Pte2g01218 578 SMART BAH_4 107 248 IPR001025 GO:0003682
Pte2g01218 578 SUPERFAMILY FYVE/PHD zinc finger 63 126 IPR011011 -
Pte2g01218 578 MobiDBLite consensus disorder prediction 1 29 - -
Pte2g01218 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 557 IPR027417 -
Pte2g01218 578 Pfam BAH domain 155 246 IPR001025 GO:0003682
Pte2g01218 578 FunFam Origin recognition complex subunit 1 71 138 - -
Pte2g01218 578 Gene3D - 142 303 IPR043151 -
Pte2g01218 578 FunFam Origin recognition complex subunit 1 139 331 - -
Pte2g01218 578 SMART PHD_3 75 120 IPR001965 -
Pte2g01218 578 SMART AAA_5 372 526 IPR003593 GO:0016887
Pte2g01218 578 FunFam Origin recognition complex subunit 1 329 528 - -
Pte2g01218 578 ProSiteProfiles BAH domain profile. 134 248 IPR001025 GO:0003682
Pte2g01218 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 130 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01218 Pte-Chr2 13473563 13477227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01218 37 562 Core DNA Replication Machinery Family AT4G14700 65.602 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte2g01218 AAA 1.2e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01218 K02603 - qsa:O6P43_028150 884.404