Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01196 ATGGGTTGGCTAAGCAAAATTTTTAAAGGCTCTGGTCAAAAGATTTCTGTGGGGCATTACGATCCAAGTTATGGAGAGGACACAAATCTTTGCCTGTCATCTAGTTCTACGGACTTGATGGTGGACGATGATAATGAAGAAATGGATCGTGCCATTGCATTATCTCTTCTAGAAGAAAGTCAAAGAGGAAAAAATGTGGTTGCTGATTGTAATTTGCAATTGGAAGAAGACGAACAACTTGCCAGAGCAATACAAGAAAGCCTAAATGTGGAGCCTCCTGCCCCTTCTAGATATGGAAATGGAAGCATTTATCAACCTGCAACAGTCTACTTCCCTATGGGATACAGGATCTGTGCCGGGTGCAATTCTGAGATTGGTTATGGTCGATATTTTAATTGCCTGAATGCCTTTTGGCATCCAGAATGTTTCCGCTGCCATGCTTGCAATCTCGCAATTTCTGACTATGAGTTCTCCACCTCCGGAAATTATCCTTACCATAAATCTTGCTATAAGATGAACTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCCGCTGGTCTTATTGAATATAGGGCACATCCTTTTTGGATCCAGAAATATTGCCCTTTTCATGAACATGATGGGACACCCCGTTGCTGTAGCTGTGAGCGAATGGAGCCACGAGACATGAGATATGTTGCTCTAAATGATGGTCGGAAGCTCTGCCTGGAATGTCTAGATTCCGGGATTATGGATACCAGTGAATGCCAACCTCTGTATAATGATATACAAAGATTTTATGAAAGTCTAGACATGAAGATAGACCAGCGAGTTCCCTTGCTTTTGGTTGAAAGGCAAGCGCTAAATGAAGCAAGGGAATGGGAGAAGAATGGCCATTATCACATGCCCGAGACCAGAGGGCTTTGCCTTTCCGAGGAGCAAACTATAAGCACCATCTCAAGACGACCTAGATTTGGAGCAGGAAATCGAGCGACGGACATGAGAACGGAACGCTATCGACTGACGCGGCGGTGTGAAGTAACGGCTATACTCATCTTGTATGGCCTTCCAAGGTTGCTTACTGGGTCAATACTGGCTCACGAGATGATGCATGCCTGGCTACGACTTAAAGGATACCGAACACTTGGTCAAGATGTGGAAGAAGGTATCTGTCAGGTTCTAGCTCATATGTGGTTGCAGAGTGAGCTTCACTCTAAATCTGGAAGTAGTTTTCCATCAACCTCATCCGCGGTACCGGCTGCCCTTCAATGTGGTACTGGAACTCAGTTTGATGGAAAGCTTGGAGAATTTTTTAAGCACCAAATTGAATCAGACATTTCCCCAGTATATGGAGATGGATTTAGAGCTGGTCAACAAGCAATGCAAAAGTATGGTCTGCGAAATACACTCGACCATATTCGGATAACTGGAACCTTTCCACATTGA 1440 0.4403 MGWLSKIFKGSGQKISVGHYDPSYGEDTNLCLSSSSTDLMVDDDNEEMDRAIALSLLEESQRGKNVVADCNLQLEEDEQLARAIQESLNVEPPAPSRYGNGSIYQPATVYFPMGYRICAGCNSEIGYGRYFNCLNAFWHPECFRCHACNLAISDYEFSTSGNYPYHKSCYKMNYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPFHEHDGTPRCCSCERMEPRDMRYVALNDGRKLCLECLDSGIMDTSECQPLYNDIQRFYESLDMKIDQRVPLLLVERQALNEAREWEKNGHYHMPETRGLCLSEEQTISTISRRPRFGAGNRATDMRTERYRLTRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLGQDVEEGICQVLAHMWLQSELHSKSGSSFPSTSSAVPAALQCGTGTQFDGKLGEFFKHQIESDISPVYGDGFRAGQQAMQKYGLRNTLDHIRITGTFPH* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01196 479 PANTHER PROTEIN DA1-RELATED 2 3 478 IPR045218 -
Pte2g01196 479 Gene3D Cysteine Rich Protein 113 190 - -
Pte2g01196 479 ProSiteProfiles LIM domain profile. 116 176 IPR001781 -
Pte2g01196 479 ProSitePatterns LIM zinc-binding domain signature. 118 152 IPR001781 -
Pte2g01196 479 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 75 94 IPR003903 -
Pte2g01196 479 CDD LIM_DA1 118 170 - -
Pte2g01196 479 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Pte2g01196 479 Pfam Protein DA1 268 473 IPR022087 -
Pte2g01196 479 Pfam LIM domain 118 172 IPR001781 -
Pte2g01196 479 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 143 - -
Pte2g01196 479 SMART uim 75 94 IPR003903 -
Pte2g01196 479 SMART uim 43 62 IPR003903 -
Pte2g01196 479 FunFam Protein DA1-related 1 112 171 - -
Pte2g01196 479 SMART lim_4 117 169 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01196 Pte-Chr2 13249128 13253480 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte2g01196 DA1-like 3.5e-94 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01196 - - qsa:O6P43_016130 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01196 2 13249128 13253480 Pte2g01196 2 13249128 13253480 RCT
Pte3g01343 3 11647758 11653178 Pte2g01196 2 13249128 13253480 RCT