Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01186 ATGGCAAGGCAGCCTTGCTTCTATGAGTTTTATTCTTCCACCTCCAGTTCCGAACGACTGAAAATTCCTGTCCAATTCACAAGTCACTTGGAAGGCAGGATTTCTGGATCAGTTATATTAAGAGGGCCCAGCGGGAATATTTGGTATTCTACTTTGAGTCAGAGAGATGAAACTATATTCTTCGATCATGGATGGGAAACGTTTCTGAAAGATCATCTTATAGAATGTGGTGACCTTTTGGTCTTCAGATACATGGGCAACTTGCATTTCAGTGTTCAAGTATTTGATCAAAGTGCATGTGAGAAAGAGTCTTCCTTTAACTCTAAATGCAGTGATGGCTCTATCGACTCGATTGAACCCAAGAGATATAAAAGAGCAAGGGAAGAGATTAATTCCTCCTTGAATACATATGATAATGGCATACCCCAGAAATTGAGGCGGAGGACCTTACAAGTTTATGCTGAAAACACACACAATAATCAGGACGTTGGACATAATGAGGATGAAGTGTTTGATAGGGTAAATGTAATTCAAAGAAATCCGGTAACAGAATTGTACAATAAAGAATCTGAGCCTCAAAGTAATAGTTCCCATTATGGAAATGGTGATCAAGAGACGCCCATTCAAGTTGGAAACAGAAAAGTGGGCATGTTAGCTTTGCCTGGTAAAATTTCTATGTCAATGCTATCAGCACGTGATGAAAAAAGAGTTGCTCGATTTTTTACTTCCTCTGTTCCTTACTTTGTGAGAATCATGAAGAGCTTCAATATCAGTGGTTCATATACTCTGAATATTCCATATCAGTTCTCAATGGGACATCTTCCAAACTATAAGATAAAAGTTGTTCTTCAAAATTTGAAAGGAGAATGTTGGACAGTAAATTCAATCCCAACCACAAGAGTGCATACAAGCCATACCTTTTGTGGTGGATGGATGGCCTTTGTTCGTGATAATGACATTAAGTTTGGAGATATCTGCATTTTTGAACTTGTTGGTGACTGTGAATTGCGAGTCCAAATTTTCAGTGTTGAAAAGGATAGTCTAGACTGCCAAAGAGGGAAATGTGCTTCAATTCAGTCCAGTTCAGGACATGATCCCAAATCATGTAAGGCTGTGGTTAAATTTCCAAAGAATTCAAGGGAGAAGTGTTCCGAACATAGTTCAAAGTGCTCAAGTAACTGCAAAAAATCTGATAAAAAATGGTCAAAGATGTCTACAGAAGTTGTTTTCTCTGTTGAAAAGAAACATTGCAAGGTATCTAGGAGTCCTATGAAGGCTACAAGTTCTTCCCCATCAAAAACTGTCAATAAAAAGTTGGCTAAAACTGCCACCCAGAGGAGACACCGCATTGAAGATGATCTTAGCTCACAAGCTAAAGCTGGTTTGAGGATGCTGTTTGCACTTGACGAACGGAGATTAGCTGAATCTTTCAATTCATCTTTTCCTAATTTCGTGAAAATTATGAAGAAGTTCAACGTCAGTGGTTCATACACTTTGAAAATCCCTCACCAGTTTTCTGCAGCACATCTACCCAACTATAAAACAGAGATTATACTCCAAAATGTACGAGGTGAGTGTTGGGTCGTGAATTGTGTGCCAGACACTAAAGGGAGGATGGTGTACACCTTCTGTGGGGGGTGGATGGCTTTTGTTCGTGATAATGACATAAATTTTGGAGATGCTTGCATTTTTGAACTTGTTGCAAAGTGTGAAATGCGGGTGTATATATCTGGGGTTGGAAAGGAAGGGCTTGACCATCAAGATTTGGAAGCAAAGAATAACAAATCAGGAATTGCATCATCTACGACGGAAAAGTTTTCCTTCAAGAACAGAAAAACATGA 1842 0.3903 MARQPCFYEFYSSTSSSERLKIPVQFTSHLEGRISGSVILRGPSGNIWYSTLSQRDETIFFDHGWETFLKDHLIECGDLLVFRYMGNLHFSVQVFDQSACEKESSFNSKCSDGSIDSIEPKRYKRAREEINSSLNTYDNGIPQKLRRRTLQVYAENTHNNQDVGHNEDEVFDRVNVIQRNPVTELYNKESEPQSNSSHYGNGDQETPIQVGNRKVGMLALPGKISMSMLSARDEKRVARFFTSSVPYFVRIMKSFNISGSYTLNIPYQFSMGHLPNYKIKVVLQNLKGECWTVNSIPTTRVHTSHTFCGGWMAFVRDNDIKFGDICIFELVGDCELRVQIFSVEKDSLDCQRGKCASIQSSSGHDPKSCKAVVKFPKNSREKCSEHSSKCSSNCKKSDKKWSKMSTEVVFSVEKKHCKVSRSPMKATSSSPSKTVNKKLAKTATQRRHRIEDDLSSQAKAGLRMLFALDERRLAESFNSSFPNFVKIMKKFNVSGSYTLKIPHQFSAAHLPNYKTEIILQNVRGECWVVNCVPDTKGRMVYTFCGGWMAFVRDNDINFGDACIFELVAKCEMRVYISGVGKEGLDHQDLEAKNNKSGIASSTTEKFSFKNRKT* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01186 613 ProSiteProfiles B3 DNA-binding domain profile. 248 344 IPR003340 GO:0003677
Pte2g01186 613 SUPERFAMILY DNA-binding pseudobarrel domain 5 100 IPR015300 -
Pte2g01186 613 CDD B3_DNA 246 342 IPR003340 GO:0003677
Pte2g01186 613 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Pte2g01186 613 MobiDBLite consensus disorder prediction 185 208 - -
Pte2g01186 613 MobiDBLite consensus disorder prediction 421 450 - -
Pte2g01186 613 ProSiteProfiles B3 DNA-binding domain profile. 484 580 IPR003340 GO:0003677
Pte2g01186 613 SUPERFAMILY DNA-binding pseudobarrel domain 477 578 IPR015300 -
Pte2g01186 613 SMART B3_2 484 580 IPR003340 GO:0003677
Pte2g01186 613 SMART B3_2 248 344 IPR003340 GO:0003677
Pte2g01186 613 SMART B3_2 6 98 IPR003340 GO:0003677
Pte2g01186 613 SUPERFAMILY DNA-binding pseudobarrel domain 241 342 IPR015300 -
Pte2g01186 613 CDD B3_DNA 482 576 IPR003340 GO:0003677
Pte2g01186 613 MobiDBLite consensus disorder prediction 422 439 - -
Pte2g01186 613 CDD B3_DNA 12 96 IPR003340 GO:0003677
Pte2g01186 613 Gene3D - 1 100 IPR015300 -
Pte2g01186 613 Pfam B3 DNA binding domain 12 97 IPR003340 GO:0003677
Pte2g01186 613 Pfam B3 DNA binding domain 252 342 IPR003340 GO:0003677
Pte2g01186 613 Pfam B3 DNA binding domain 484 574 IPR003340 GO:0003677
Pte2g01186 613 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 346 IPR044837 -
Pte2g01186 613 Gene3D - 230 345 IPR015300 -
Pte2g01186 613 Gene3D - 469 579 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01186 Pte-Chr2 13007595 13011353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01186 246 567 B3 DNA Binding Superfamily AT3G18990 21.387 3.09e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte2g01186 B3 1.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01186 - - pcin:129303869 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01186 2 13007595 13011353 Pte2g01186 2 13007595 13011353 RCT