Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01173 ATGCCGACCCATGCCTCTGATTCACAGCCACAGCAGCAGCAGCCGGCTCGACAGATACGACCGACCCACACACAGGCAAATACTCCAAAGCAGCTGCTGCCGCACGATTTGCCTTCACCGTTGCCTTGGATAGCGATGCAATACCCGGCGGCAGCCATGATGATGCAGCACCAGATGTTACATCCTCAGCATTACGTTCTTCAGCCTCTGCCGCCGCAGAATTACATGCCGTACCACCAGTACTATCATCATCTACACCAGCATCCTTATCAGAATCAACACCAGCGACAAGGATCAGGCAGTGGAGAGAACAAGACGATCTGGGTCGGAGATTTGCACCATTGGATGGACGAGAATTACCTTCATAGCTGCTTCGCTTCCACGGGAGAGATTTGCTCCATCAAGGTTATTCGCAATAAGCAGACTGGTTTGTCAGAGGGATATGGATTTGTTGAATTCTTTTCACACGCAACAGCTGCGAAAGTCTTGCAAGACTACTCCGGCATTTTGATGCCCAACGCAGAACAGTCATTCCACCTAAACTGGTCCGCATTTAATTCCAGCGATAAACGTTCAGACAATATTCCCGATCTTTCTATTTTTGTTGGAGATTTAGCTGCAGATGTCACAGATAGCATGTTGCGTGAAACTTTTGCTACTAAATATCCATCTGTTAAAGATGCAAAAGTCGTTATTGACGCCACAACTGGTCATTCAAAGGGTTATGGATTTGTAAGGTTTGGAGATGATAATGAGAGATCACAGGCTATGACTGAAATGAATGGTGTTTATTGTTCGAGCAGGCCTATGCGCATTGGTGCTGCAACTCCAAGGAAGTCTTCTGGCTGTCAGCAGCAGGGGGGGAATGCCTCGAATGGCAAGCCTGGCCAAGGGTTTCAATCTGATTCAGATCCAAACAACACAACTATATTTGTTGGCGGACTCGATCCTGATGTTACCGATGAAGATCTCATTAAACCCTTCTCCGAGTATGGTGACATTATTTTTGTCAAGATTCCCGCAGGAAAACATTGTGGTTTTGTGCAGTTTGCAAGCAGAAATAGTGCTGAGGAGGCAAAGGAAAAATTAAATGGAACAGTCATTGGCAAGCAAACAGTGCGTTTGTCATGGGGCCGCACTCCGCCAAATAAGCAGGTTAGAGCTGATTTTGGCTACCCATGGTGTGGGGCATACTATGGAGGTCAGCTTTACAATGGTTATGGCTATACTTGTGCACCTCCTCGTGATCCAAGCCTATATGCTGCTCCAGCCACGGCATATGCGGCTTACCCACTGTACGGCAGTCACCAACGGCAAGTAAGCTGA 1326 0.4751 MPTHASDSQPQQQQPARQIRPTHTQANTPKQLLPHDLPSPLPWIAMQYPAAAMMMQHQMLHPQHYVLQPLPPQNYMPYHQYYHHLHQHPYQNQHQRQGSGSGENKTIWVGDLHHWMDENYLHSCFASTGEICSIKVIRNKQTGLSEGYGFVEFFSHATAAKVLQDYSGILMPNAEQSFHLNWSAFNSSDKRSDNIPDLSIFVGDLAADVTDSMLRETFATKYPSVKDAKVVIDATTGHSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGCQQQGGNASNGKPGQGFQSDSDPNNTTIFVGGLDPDVTDEDLIKPFSEYGDIIFVKIPAGKHCGFVQFASRNSAEEAKEKLNGTVIGKQTVRLSWGRTPPNKQVRADFGYPWCGAYYGGQLYNGYGYTCAPPRDPSLYAAPATAYAAYPLYGSHQRQVS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01173 441 SUPERFAMILY RNA-binding domain, RBD 69 173 IPR035979 GO:0003676
Pte2g01173 441 SUPERFAMILY RNA-binding domain, RBD 197 382 IPR035979 GO:0003676
Pte2g01173 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 185 IPR000504 GO:0003723
Pte2g01173 441 MobiDBLite consensus disorder prediction 1 32 - -
Pte2g01173 441 Gene3D - 182 287 IPR012677 -
Pte2g01173 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 277 IPR000504 GO:0003723
Pte2g01173 441 MobiDBLite consensus disorder prediction 275 307 - -
Pte2g01173 441 FunFam Polyadenylate-binding protein RBP47 290 410 - -
Pte2g01173 441 MobiDBLite consensus disorder prediction 278 307 - -
Pte2g01173 441 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 95 384 - -
Pte2g01173 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 380 IPR000504 GO:0003723
Pte2g01173 441 FunFam Polyadenylate-binding protein RBP47B 104 184 - -
Pte2g01173 441 MobiDBLite consensus disorder prediction 1 36 - -
Pte2g01173 441 Gene3D - 104 181 IPR012677 -
Pte2g01173 441 FunFam Polyadenylate-binding protein RBP47B 186 288 - -
Pte2g01173 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 269 IPR000504 GO:0003723
Pte2g01173 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 173 IPR000504 GO:0003723
Pte2g01173 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 373 IPR000504 GO:0003723
Pte2g01173 441 CDD RRM1_SECp43_like 106 186 - -
Pte2g01173 441 CDD RRM2_SECp43_like 197 276 - -
Pte2g01173 441 Gene3D - 289 388 IPR012677 -
Pte2g01173 441 SMART rrm1_1 309 376 IPR000504 GO:0003723
Pte2g01173 441 SMART rrm1_1 106 181 IPR000504 GO:0003723
Pte2g01173 441 SMART rrm1_1 199 273 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01173 Pte-Chr2 12901737 12905894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01173 74 387 Eukaryotic Initiation Factors Gene Family AT4G34110 27.864 3.52e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01173 - - pop:18104937 604.364