Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01160 ATGGAAAACCTTAACCAGTTAAAGTTGGAGAATCAAATGGAGGTTGCGACACAAATGATGATGCAGATGGACAAGCTTCCATTCGATTTTTGTGGTTCTAGCAGCGGTGATGATCCTAACTTTCTAACATCAGTTTTTTGTGGTGCAAGTGCAAGTACTGGGTCTTTATCAAATCTTAGGGATAACTCACCTGTGGCTTCTCCATACCCATCATCCACCGGGCCTGTCAGTACATATAATATTCCGCTACTTCCAATTCAAGAACAAACCAGGCAGCCGCATATGTACTCGAATTCGAGCAAGAGAAACAGGTGGAAAAACCATGGAGATTTATCCAGCACAAATGCTTTCACTACAACGATAGAGAAGCAGAACTCGATGGCAGCCATGAGGGAAATGATGTACCGAATAGCAGCCATGCAACCAATTAACATAGACCCAGAGTCTGTGAAGCCACCCAAGAGGAGAAACGTCAAGATATCCAAGGATCCTCAGAGTATAGCTGCACGGCATAGAAGGGAAAGAATAAGCGAGAGAATTAGAATTCTGCAGAGACTCGTACCTGGTGGGACGAGAATGGACATAGCATCCATGTTAGATGAGGCCATTCACTATGTCAAATTCTTGAAGACACAGGTTCAGTCATTAGAGAGATATGCAGCTACTAGGCCAATCACTGCCGTAGGGTTCCCGTTGGCAATGTCTAGCGGAGGAGGAATGAGAATTAGGCCGCTGTATCTTTCTCCGGAAGAGACATATCAAGCTCCTCAGAATGTTCAGTATCAGGATTACCCGGAATCTTAG 804 0.4465 MENLNQLKLENQMEVATQMMMQMDKLPFDFCGSSSGDDPNFLTSVFCGASASTGSLSNLRDNSPVASPYPSSTGPVSTYNIPLLPIQEQTRQPHMYSNSSKRNRWKNHGDLSSTNAFTTTIEKQNSMAAMREMMYRIAAMQPINIDPESVKPPKRRNVKISKDPQSIAARHRRERISERIRILQRLVPGGTRMDIASMLDEAIHYVKFLKTQVQSLERYAATRPITAVGFPLAMSSGGGMRIRPLYLSPEETYQAPQNVQYQDYPES* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01160 267 SMART finulus 166 215 IPR011598 GO:0046983
Pte2g01160 267 FunFam BHLH transcription factor 163 226 - -
Pte2g01160 267 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 52 258 IPR045843 GO:0003700|GO:0006355
Pte2g01160 267 Gene3D - 159 224 IPR036638 GO:0046983
Pte2g01160 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Pte2g01160 267 Pfam Helix-loop-helix DNA-binding domain 167 209 IPR011598 GO:0046983
Pte2g01160 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 220 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01160 Pte-Chr2 12682651 12683698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01160 126 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 74.783 2.33e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte2g01160 HLH 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01160 - - tcc:18591179 225.328