Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01154 ATGTACCATAACTGTAAGCCTCCGTCTTTAATGACAGGCTTAGCTTCTGACTCTGGAGAGGTATCAACCTTGTTCAGCCAACTTTTGCATAGCCCTTCATCTTCCTGCATGCCGCTGAAGACCCATCAGCATCGACAGGACTTATCAGCATTACCCTTAGTTTCGTCGCCACTCGAATATTTAACAGCAGACGCTCCATCTGGCGGTTCGGATGTAGCGGTTGCTGAATCTTCCTCTAGTTTCAATTTCTCCGATCCAAGCGCTTATATTTCAGCCGATGTCAAAGGGAGTGGAGGAAACCCAAACCCGATTTTCTCTGGTGGTATTGAGGATTCAGATGCCAACACTTCTGTCAGAGGATATAGAATTTCAACTTCGTCGGACGATAATCATGCTGCTTTGGCTTGTAATATGGAGGATAAGGAAACGTCGGAGTTGCCATCAAAGCCAATGTTGCGATCTTCATCCAAGAGGAGCAGAACTGCTGAAGTACACAATTTGTCAGAAAAGAGGAGAAGGAGTAGGATTAATGAGAAAATGAAGGCCTTGCAGAACCTAATTCCTAATTCTAACAAGACGGACAAAGCTTCAATGCTGGATGAGGCTATTGAATATTTGAAGCAGCTCCAACTGCAAGTACAAATGTTGTCCCTGAGGAAAGGTTTGAGCCTGCATCCAATGAGCTTTACTGGAATAGTCCAGCCCATTGATATGCCTCAGGAAGGAATAAGCTGTGCTGACGGTAATGGATTCCAGAATGCGAGCGGAGGCTTTGCAACATTGGCAACACATGTAGAAAATTCTGTTGAAGCTGCTTTTAATCTCTCCAAAGAATTTGTCTTCTCAAGTCAACCAGTTATAACTAAAGAGACGACCACAGCAGCATCAAAATCTTCATCTAGTCTCCATCCTCCTTTTCGGGTTCATGATATTCAAATGGGACATTTCCTCCCAACATCTTCCCAGTAA 969 0.4407 MYHNCKPPSLMTGLASDSGEVSTLFSQLLHSPSSSCMPLKTHQHRQDLSALPLVSSPLEYLTADAPSGGSDVAVAESSSSFNFSDPSAYISADVKGSGGNPNPIFSGGIEDSDANTSVRGYRISTSSDDNHAALACNMEDKETSELPSKPMLRSSSKRSRTAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRKGLSLHPMSFTGIVQPIDMPQEGISCADGNGFQNASGGFATLATHVENSVEAAFNLSKEFVFSSQPVITKETTTAASKSSSSLHPPFRVHDIQMGHFLPTSSQ* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01154 322 Pfam Helix-loop-helix DNA-binding domain 164 210 IPR011598 GO:0046983
Pte2g01154 322 FunFam Basic helix-loop-helix transcription factor 155 218 - -
Pte2g01154 322 SMART finulus 166 215 IPR011598 GO:0046983
Pte2g01154 322 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 309 IPR031066 -
Pte2g01154 322 Gene3D - 155 219 IPR036638 GO:0046983
Pte2g01154 322 MobiDBLite consensus disorder prediction 140 172 - -
Pte2g01154 322 MobiDBLite consensus disorder prediction 156 172 - -
Pte2g01154 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Pte2g01154 322 CDD bHLH_AtPIF_like 160 222 IPR047265 -
Pte2g01154 322 Coils Coil 199 219 - -
Pte2g01154 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 219 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01154 Pte-Chr2 12621143 12623409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01154 160 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.000 1.11e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte2g01154 HLH 4.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01154 - - qsa:O6P43_016048 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01154 2 12621143 12623409 Pte2g01154 2 12621143 12623409 RCT