Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01146 ATGACGTCGACCAAGAAAGACGTGGATCGGATGAAAGGGCCGTGGAGTCCCGAAGAAGATGAAGCCTTGCGACGACTTGTACAAACCTATGGCCCGAGAAATTGGTCCGTGATCAGCAAATCGATCCCTGGTCGATCTGGCAAGTCCTGCCGTTTGCGCTGGTGCAATCAGCTATCGCCGGAGGTGGAGCACAGGCCGTTCACACCCGATGAGGACGAGACTATCATTAGAGCCCATGCAAAGTTTGGGAACAAGTGGGCCACCATTGCCAGACTTCTTAATGGACGAACAGACAACGCCATCAAGAATCACTGGAACTCAACTCTAAAGCGAAAATGCTCTGTCTTGTGTGAGGATTCCAGTGGCGACGCGCATGACCAGCCTCCTCTTAAAAGATCTGCCAGTCTCGGTGCTGGATCGGGTTTGTGTCTTAGCCCGAGTAGCCCATGTGGATCCGATTTAAGCGAGTCTAGCTTGCCCGCTGTGTCCGCTTTGTTTAGACCCAAAGCCAGAACGGTCACTTTCGGTAGCTCGAATCAGCAAGTCGACACCCTGCGTTCTGTCTCCGATCCGCCAACATCACTGAGCCTGTCAATACCAGGATCGGATTCGGGTGAGATTGGAGGGAATCAGGGTTCTGGATCTATGCAGGGATCCAGCTTCATCAAGATTGTGCCGCCAATGGCAGTACCACCACAAGTAGTTCCATCATGGGTGAGAGGACTAGCTGACCAAGTTGGTTATCTTGATGAGAGTCACAACCACAACAACATGAAACAGGATCAGCAGTTCTTCAGTGCAGAGTTTTTGGCTGTGTTACAAGAGATGATAAGGAAAGAAGTAAGGAGTTATATGTCTGGGATAGAGCAAAATGGACTGTGTTTGCATACGGAGGCTATTCGAAATGCCGTCGTGAAGTGTATTGGGATTAGCAGGGTCGAGTAG 945 0.5058 MTSTKKDVDRMKGPWSPEEDEALRRLVQTYGPRNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTPDEDETIIRAHAKFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSVLCEDSSGDAHDQPPLKRSASLGAGSGLCLSPSSPCGSDLSESSLPAVSALFRPKARTVTFGSSNQQVDTLRSVSDPPTSLSLSIPGSDSGEIGGNQGSGSMQGSSFIKIVPPMAVPPQVVPSWVRGLADQVGYLDESHNHNNMKQDQQFFSAEFLAVLQEMIRKEVRSYMSGIEQNGLCLHTEAIRNAVVKCIGISRVE* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01146 314 Gene3D - 65 132 - -
Pte2g01146 314 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Pte2g01146 314 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Pte2g01146 314 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Pte2g01146 314 Gene3D - 11 63 - -
Pte2g01146 314 MobiDBLite consensus disorder prediction 182 213 - -
Pte2g01146 314 SMART sant 63 111 IPR001005 -
Pte2g01146 314 SMART sant 11 60 IPR001005 -
Pte2g01146 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Pte2g01146 314 FunFam Transcription factor MYB44 66 112 - -
Pte2g01146 314 CDD SANT 14 56 IPR001005 -
Pte2g01146 314 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Pte2g01146 314 PANTHER MYB PROTEIN-RELATED 12 184 - -
Pte2g01146 314 CDD SANT 66 109 IPR001005 -
Pte2g01146 314 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Pte2g01146 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Pte2g01146 314 FunFam MYB transcription factor 12 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01146 Pte-Chr2 12506157 12507101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01146 4 315 MYB Transcription Factor Family AT4G37260 46.784 5.10e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte2g01146 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01146 K09422 - zju:107420003 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00998 14 31572731 31573901 Pte2g01146 2 12506157 12507101 RCT
Pte2g01146 2 12506157 12507101 Pte14g00998 14 31572731 31573901 RCT
Pte2g01146 2 12506157 12507101 Pte12g00323 12 2651434 2653326 RCT
Pte2g01146 2 12506157 12507101 Pte2g01146 2 12506157 12507101 RCT