Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01135 ATGGCTCTGGAAGCTCTCAAGTCTCCATCTTCAGCCACACCATCATCCTTTACCGACCTCAACTCCATGGAGTCGTGGACAAAGGGAAAGCGTTCCAAGCGTTCCCGTATGGAGCAACAGCAGACATGTTCAGAGGAGGAGTATTTAGCTCTCTGTTTGGTTATGCTTGCTCGAGGAAGCTCCGGTATATCCACCGTTCACTTTAACGACATGAACCGCAGTAGCAGCTCTGCAACTCCTTGTCCCATAACAGATCCTGAACCTACTGATCATCAGTCTGCCGCGAATTCAATCAAGCTCGCTTACAAGTGTTCTGTCTGCAACAAAGCCTTCTCATCATTTCAGGCTCTGGGAGGTCACAAATCCAGCCATAGAAAACTTTCTAGTATAGGTGGAGAGAACCAGTCAACGTCCTCTGATGTTACCACTACCTCTGCAAACACAACAGCAGCCACAGCGAACGGTAGAGGAAAGGCCCATGAATGCACTATCTGCCATAAGTCCTTCCCTACCGGTCAGGCCTTGGGGGGGCACAAACGTTGCCACTATGACGGTGCCGGGAGCAGCACCATGACCTCCTCAGAAGGTGTGGGATCTACACACACCGTAAGTCACAGTCAATCTCGTGTGTTCGATCTAAACCTACCACCCTTGCCCGAATTCTCACCCAAGTTGTTCATATCCTGTGACCAAGAGGTAGAGAGCCCTCTGCCGTTGAAGAAGCCTCGTCTGCTGTTGGCACAAGACCACTGA 753 0.5073 MALEALKSPSSATPSSFTDLNSMESWTKGKRSKRSRMEQQQTCSEEEYLALCLVMLARGSSGISTVHFNDMNRSSSSATPCPITDPEPTDHQSAANSIKLAYKCSVCNKAFSSFQALGGHKSSHRKLSSIGGENQSTSSDVTTTSANTTAATANGRGKAHECTICHKSFPTGQALGGHKRCHYDGAGSSTMTSSEGVGSTHTVSHSQSRVFDLNLPPLPEFSPKLFISCDQEVESPLPLKKPRLLLAQDH* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01135 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 182 IPR013087 -
Pte2g01135 250 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Pte2g01135 250 MobiDBLite consensus disorder prediction 73 92 - -
Pte2g01135 250 MobiDBLite consensus disorder prediction 1 39 - -
Pte2g01135 250 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 28 219 IPR044653 GO:0003700
Pte2g01135 250 SUPERFAMILY beta-beta-alpha zinc fingers 102 182 IPR036236 -
Pte2g01135 250 Gene3D Classic Zinc Finger 99 182 - -
Pte2g01135 250 MobiDBLite consensus disorder prediction 8 25 - -
Pte2g01135 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Pte2g01135 250 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Pte2g01135 250 MobiDBLite consensus disorder prediction 128 145 - -
Pte2g01135 250 MobiDBLite consensus disorder prediction 122 145 - -
Pte2g01135 250 SMART c2h2final6 102 124 IPR013087 -
Pte2g01135 250 SMART c2h2final6 160 182 IPR013087 -
Pte2g01135 250 Pfam C2H2-type zinc finger 159 184 - -
Pte2g01135 250 Pfam C2H2-type zinc finger 101 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01135 Pte-Chr2 12334958 12336071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01135 1 244 C2H2 Transcription Factor Family AT1G27730 50.973 2.04e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte2g01135 zf-C2H2_6 5.4e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01135 - - qsa:O6P43_015998 273.092