Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01124 ATGGCGTTTCGAGGGACGACACAGAAATGTACGGCCTGTGTCAAGACTGTCTATCTAGTCGACAGGTTGACTACTGATAACCGTGTCTACCACAAAGCCTGCTTCCGCTGCCACCATTGCAAAGGAACCCTCAAGCTTGGCAACTACAATTCCTTTGAGGGCGTTTTGTACTGCAGACCCCACTTCGATCAACTCTTCAAAAGAACTGGCAGCCTTGAGAAAAGTTTTGAAGGAACTCCCAAAGTTGTGAAAGCACAAAAACCTGTAGGTATGGAGAAATCTGCAGTGGCAAATGTCTCCAATAAGTTTGGTGGAACCAGAGAAAATGTGTTGGATGCAATAATACGGTCTATCCCACTGAGAAGCCCTTCCAACTACATTGCACACGAGGGTAGACTCTACTGTAAGCATCATCACAACCAACTCATCAAAGAGAAAGGCAACTTGAGCCAACTTGAGGGGGAGCATGACAAGAGTGCTGTGGATGAGAAACTCCAAGTTAAAGAATTGCTACAGAGACATGAATAA 528 0.4545 MAFRGTTQKCTACVKTVYLVDRLTTDNRVYHKACFRCHHCKGTLKLGNYNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKVVKAQKPVGMEKSAVANVSNKFGGTRENVLDAIIRSIPLRSPSNYIAHEGRLYCKHHHNQLIKEKGNLSQLEGEHDKSAVDEKLQVKELLQRHE* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01124 175 FunFam LIM domain and actin-binding 1 4 74 - -
Pte2g01124 175 PANTHER OS06G0237300 PROTEIN 122 164 - -
Pte2g01124 175 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pte2g01124 175 SMART lim_4 9 61 IPR001781 -
Pte2g01124 175 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Pte2g01124 175 Gene3D Cysteine Rich Protein 5 74 - -
Pte2g01124 175 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 152 - -
Pte2g01124 175 CDD LIM1_SF3 6 68 - -
Pte2g01124 175 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pte2g01124 175 Pfam LIM domain 10 64 IPR001781 -
Pte2g01124 175 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01124 Pte-Chr2 12194619 12195846 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte2g01124 LIM 5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01124 K09377 - csin:114296151 268.47