Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01116 ATGCCCATGTTTCAGCCATCTACTGGGAGAAGAGATGGCGATGTGAGACTTGATGTGAGTGGTGGTGGGCAAGTTCTTGATCTGGAAACCGCAGTCAAAGATGGGGTTTTTGATGGCGGAGAGGGGTTAAACTGTGTTGGTGGCTTTTCGGGGAAATTGGATCTGAAGAAGATGATTGAAGAGCTAGATGCCATTGACGTGCCCTCAGTGTTTATTTGTCCAATATCATTGGAGCCTATGCAAGACCCTGTGACCCTTTGTACGGGTCAGACATACGACAGATCCAACATCCTGAAATGGTTTGCTCTTGGTCACTGCACTTGTCCCACCACAATGCAAGAACTTTGGGACGATTCTGTCACACCCAATAGGACTCTGCACCAGCTTATACATAGTTGGTTTTCTCAAAAGTACTTGGCCATGAAGAAGAAGTCCGAGGATGTGCATGGAAGGGTCCTGGAGCTCGTGGGCACACTTAAGAAGGTAAAAGGCCAAGCTAGAATTCTGGCTCTCAAAGAGATGAGGCAGGTTGTAGCTGCACATCCGTCTACTAGGCAGACATTAGCTGAGAACGGCGGGCTCTCTTTGATGTCTTCTTTGTTGGGTCCGTTCACTTCGCATGCAGTTGGCTCGGAAACAATTGGGATTCTAGTCAATTTGGATATAAATTCAGAGACAAAGACCAGTCTGATGCAACCTGCAAAGATATCTGTGGTAGTGGATATTATGAATGAGGGAACGATTGAGACAAAAATCAGTTGTGCCAAACTGATCCATATTTTGATTGAAGGGAATGATTCAACAACTGACGCCGTCTCCAGCTTGAGTTTGCTTGTCGGATTGTTAAGATTAGTGAAGGATAAGAGATATCCCAATGGGGTATTAACTGGACTTACGCTGTTAAAAACTATATGTTTCCAGTCTCACGAATCGGTTAGAAGGTCAATAGTGAGTATTGGAGCGGTTCCAAATTTAATTGGGCTATTGCCTGGCTTGAATGACGATTGCTTGGAGTTGGCCCTTTTCGTTCTAGACAGTCTGTCAAATTTTCCGGAGGGAATGCAGGCCATGAAAGATTGTCCTAACATTATACCAGTTTTAGTGAAGTTATTGATGAAGGTTTCAGAAAGCTGCACGGAGTTTGCTTTGTCTATCTTGTGGGCAGTTTGCAAACTTGCTCCTGACGAATGCGCTTCACAAGCTGTGGAGGCTGGTTTGGCTGCAAAGCTACTGCTTGTAATTCAGAGTGGCTGCAATCCTTTGTTAAAGCAAAAATCAGCTGAGCTCCTAAAATTGTGTAGTTTAAATTATTCTGCTTCCCTTTTCATTTCGAAATGTAAGCTTACAACAACAATGCAATGA 1362 0.4413 MPMFQPSTGRRDGDVRLDVSGGGQVLDLETAVKDGVFDGGEGLNCVGGFSGKLDLKKMIEELDAIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFALGHCTCPTTMQELWDDSVTPNRTLHQLIHSWFSQKYLAMKKKSEDVHGRVLELVGTLKKVKGQARILALKEMRQVVAAHPSTRQTLAENGGLSLMSSLLGPFTSHAVGSETIGILVNLDINSETKTSLMQPAKISVVVDIMNEGTIETKISCAKLIHILIEGNDSTTDAVSSLSLLVGLLRLVKDKRYPNGVLTGLTLLKTICFQSHESVRRSIVSIGAVPNLIGLLPGLNDDCLELALFVLDSLSNFPEGMQAMKDCPNIIPVLVKLLMKVSESCTEFALSILWAVCKLAPDECASQAVEAGLAAKLLLVIQSGCNPLLKQKSAELLKLCSLNYSASLFISKCKLTTTMQ* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01116 453 Gene3D - 150 432 IPR011989 -
Pte2g01116 453 Pfam U-box domain 67 137 IPR003613 GO:0004842|GO:0016567
Pte2g01116 453 CDD RING-Ubox_PUB 68 120 IPR045210 -
Pte2g01116 453 PANTHER WDSAM1 PROTEIN 63 439 IPR045185 GO:0061630
Pte2g01116 453 SUPERFAMILY RING/U-box 61 137 - -
Pte2g01116 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 149 IPR013083 -
Pte2g01116 453 SUPERFAMILY ARM repeat 155 436 IPR016024 -
Pte2g01116 453 SMART Ubox_2 70 133 IPR003613 GO:0004842|GO:0016567
Pte2g01116 453 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01116 Pte-Chr2 12110557 12111918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01116 1 454 U-box Gene Family AT3G49810 65.639 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01116 - - qsa:O6P43_015965 682.174