Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01109 ATGATGATCGGAGAACGAAACAGATCCATCTCTACCCTCCATATTCCTCCTTGGAACCCATTTGATGACTCAATGTCCTCAGTTGCCTCTCCATTCTACGTCACTGCCTTCCCCAGCAACTTCAACGGCAATGCCGGTCCTGGCGGTGACATCTCTCCTCGACACGTTGACTCGTCCATTTCTCTCCACCACACCCTTTTGACTGAGTTGGACTTGCTTTACGGTGAAGAACCAGACGTCGGCATGGGCGACTACTCCGGCGACCATTTCCGCATGTTCGAGTTCAAAATAAGGAGATGCCCTCGTGGAAGGTCACATGACTGGATGGAATGTCCTTTCGCCCATCCCGGTGAGAAAGCTCGCCGTAGGGACCCGCGGAAATACTACTACTCCGGAGTGGCGTGTCCCGAGTTTCGGAAAGGCTATTGCGGCAAGGGTGAATCTTGCGAGTTCGCTCATGGAGTGTTTGAGAGTTGGCTTCACCCTGCCCGCTACAGGACTCAGCCATGTAAGGACGGTATCAGTTGTCGCAGACGAGTTTGTTTCTTTGCTCATACTTCCGATCAATTGCGGGTGTTGAGTACTCATGATTCTCCTGATTTCTCAGAGGGGTCACCGATCCATCATGCTTCGGAAATCTATTTTGCAAAGGGTTCATCGGTTTCTTCTCCAACGTCGATTCTCATCTCCCCGCCAATCTCTCCGCCGTCTGATTCGCCTCTCATGTCGCCAAGGATCCCACAATCTTGTGATGGATCTTTCAACTCGGTGCATGAACTCGTCGCTTCGATGCGTAATCTTCAGTTGGTAAATATTGGAACTGATAGTGGTCGAGAACTGAACGTAGGTTCTGGGTTTTGTTCTACTGGCAAAGTTTTCAACGTGGGGTCTGGGTTTCGTAACTCGCCTTCAACTCCAACTCGCACACCAACAAAGTCAGCTCTCAATCCGATGGACCCATGGGATCAGACCTGCCAGGAAGAACCAGCGATGGAGAGAGTAGAATCTGGGAGAGATCTGCGAGCCAAAATATATGCTAAGCTGAGGAAAGAGAATTCGCTGAAGCGTGGTGCATTGGAGGTTTCATCCCCAGATGTTGATCTTGGTTGGGTCTCAGAGCTCGTCAAGTGA 1131 0.5066 MMIGERNRSISTLHIPPWNPFDDSMSSVASPFYVTAFPSNFNGNAGPGGDISPRHVDSSISLHHTLLTELDLLYGEEPDVGMGDYSGDHFRMFEFKIRRCPRGRSHDWMECPFAHPGEKARRRDPRKYYYSGVACPEFRKGYCGKGESCEFAHGVFESWLHPARYRTQPCKDGISCRRRVCFFAHTSDQLRVLSTHDSPDFSEGSPIHHASEIYFAKGSSVSSPTSILISPPISPPSDSPLMSPRIPQSCDGSFNSVHELVASMRNLQLVNIGTDSGRELNVGSGFCSTGKVFNVGSGFRNSPSTPTRTPTKSALNPMDPWDQTCQEEPAMERVESGRDLRAKIYAKLRKENSLKRGALEVSSPDVDLGWVSELVK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01109 376 Gene3D - 131 192 - -
Pte2g01109 376 ProSiteProfiles Zinc finger C3H1-type profile. 129 156 IPR000571 GO:0046872
Pte2g01109 376 PANTHER UNKEMPT FAMILY MEMBER 76 376 IPR045234 -
Pte2g01109 376 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Pte2g01109 376 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Pte2g01109 376 FunFam Zinc finger CCCH domain-containing protein 66 87 155 - -
Pte2g01109 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 154 IPR000571 GO:0046872
Pte2g01109 376 MobiDBLite consensus disorder prediction 226 248 - -
Pte2g01109 376 MobiDBLite consensus disorder prediction 298 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01109 Pte-Chr2 12050258 12052725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01109 78 235 C2H2 Transcription Factor Family AT5G12850 54.167 1.17e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte2g01109 zf-CCCH 2.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01109 - - vvi:100247549 404.445