LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte2g01089	ATGGAGAGGGTTGTAGTGAAAGAGGAAGAAACGTTGACACCTGCAGCTGCTGGTTCATCATCGTCATCTTCCTCTTCATCTTCAAGCATTTCCCCACAACCCATGGAGGGTTTGCACGATATGGGTCCTCCTCCATTTCTTACGAAGACCTTCGAAATGGTTGAAGACCCGGCAACTGACTCCATTGTATCATGGAGCAAAGCTCGCAACAGCTTCATTGTGTGGGACTCTCACAGATTCTCCAGCACTCTCCTTCCTCGCTACTTCAAACACAACAATTTCTCCAGCTTCATTCGCCAGCTCAATACATATGGTTTCAGAAAAGTTGACCCTGATCGCTGGGAATTTGCTAACGAAGGGTTCTTGGCAGGACAGAGGCACTTACTGAGAACAATCAAGAGAAGGAGGAATGTCACACAGTGTGTTCAACAACAAGGTGGAGGAGCTTTTGTTGAATTGGGGCACTACGGCTTGGAAAATGAGCTTGAAATGTTAAGAAGAGACAAGAATTTGCTTATGGCTGAAACAGTTAGGTTAAGACAGCAACAGCAAAACTCAAGAGAACAAATCTATGCCATGGAGAGTAGATTGCAGGCAACTGAGAGAAAGCAACAGCAGTTTATGACTTTCCTTGCTAAAGCACTTAGCAATCCAACTTTCGTCCACCAATTCGTTCAGAGAAGTGACCTGCGAAAGGAACTGGGAGGTGTTGAGATTGGACGAAAGAGAAGACTCACTGCTAGCCCATCCACAGAGAATTTGCTAGAAGTTATACCTATTGCTGAGCCTAGTCCAGAAATGGGGGACCACCTAAACCAAGATCAAGAGGGACTTCCGAGAATGGAGTCGGATATAGAAACATATTTCACATCAGGATTTGATAACGAATCAAGCAGTCAGATCAAGTATCCAGGTGAAAGTACAATCCCCACAAGTGATACCGATTTCAATTCAGTTAACGAGACCATCTGGGAGGAATTCCTGACTGAAGAGTTGGCTTCTGAGAGTATGAACAAAGATGCTACAGTAGGGGACGAACTCGACATCGATGCCCCTGTGGAGGATTTGGCTGTAAATCCAGCAGACTGGACCGAAGGATTGCAAGACCTTGTAGATCAATTGGAGTATTTGAGTTCTAAACATGATCAACCCCTCAGATGA	1161	0.4505	MERVVVKEEETLTPAAAGSSSSSSSSSSSISPQPMEGLHDMGPPPFLTKTFEMVEDPATDSIVSWSKARNSFIVWDSHRFSSTLLPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLRTIKRRRNVTQCVQQQGGGAFVELGHYGLENELEMLRRDKNLLMAETVRLRQQQQNSREQIYAMESRLQATERKQQQFMTFLAKALSNPTFVHQFVQRSDLRKELGGVEIGRKRRLTASPSTENLLEVIPIAEPSPEMGDHLNQDQEGLPRMESDIETYFTSGFDNESSSQIKYPGESTIPTSDTDFNSVNETIWEEFLTEELASESMNKDATVGDELDIDAPVEDLAVNPADWTEGLQDLVDQLEYLSSKHDQPLR*	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte2g01089	386	ProSitePatterns	HSF-type DNA-binding domain signature.	85	109	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte2g01089	386	MobiDBLite	consensus disorder prediction	1	42	-	-
	Pte2g01089	386	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	32	274	IPR027725	-
	Pte2g01089	386	Pfam	HSF-type DNA-binding	46	135	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte2g01089	386	Gene3D	-	39	136	IPR036388	-
	Pte2g01089	386	Coils	Coil	162	182	-	-
	Pte2g01089	386	SMART	hsfneu3	42	135	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte2g01089	386	MobiDBLite	consensus disorder prediction	14	34	-	-
	Pte2g01089	386	SUPERFAMILY	"Winged helix" DNA-binding domain	42	135	IPR036390	-
	Pte2g01089	386	PRINTS	Heat shock factor (HSF) domain signature	97	109	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte2g01089	386	PRINTS	Heat shock factor (HSF) domain signature	84	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte2g01089	386	PRINTS	Heat shock factor (HSF) domain signature	46	69	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte2g01089	386	FunFam	Heat shock transcription factor 1	39	136	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte2g01089	Pte-Chr2	11824751	11826143	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte2g01089	32	380	HSF	AT2G26150	53.824	6.10e-126	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pte2g01089		HSF_DNA-bind	5.7e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte2g01089	K09419		-	tcc:18588081	498.819