Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01077 ATGGACGGCGGAGCTCCGGACTACCCACGTACGGTGGAAGAAGTCTTTAGAGATTTCAAGGGTCGAAGAGCCGGCGTGATGAAGGCTCTTACTGTTGATGTCGAAGAGTTCTATCAACAGTGTGATCCAGAAAAGGAAAATCTCTGCCTGTATGGATTTCCTACTGAGCAGTGGGAAGTCAACCTACCAGCTGAGGAAGTACCTCCAGAGTTTCCTGAACCTGCCTTGGGTATCAATTTTGCCAGAGACGGGATGCAAGAGAAGGATTGGCTGACCCTGATTGCAGTCCACAGTGATACATGGTTACTTGCAGTGGCCTTTTATTTTGGTGCCAAGTGTGGACTTGATAAGGCTGATAGGAACAAACTTTTTAATATGATAAACGATCTTCCAACAGTATTCGAAGTTGTGACAGGAGCGGCCAAGAAACAAACGAAGGAAAAGTCAAATCATAGCAGTAACGAATCAAAATCAAACTCAAAGCGAGCTTCTGAATCCCAAGGGAAGCATTCTAATGCGATTCAACCTGAGGACGACAATGAGAATGATCTTGTAGAAGATGATGATGAGCATGGGGAGACATTATGTGGGGCTTGTGGTGAGAACTATACGAGAGACGAGTTCTGGATCTGCTGTGACATTTGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCAAGGGCTGCGCACATCAAGCAATATAAATGCCCATCGTGCAGCAACAACAAGAGGGCTCGACCTTGA 753 0.4635 MDGGAPDYPRTVEEVFRDFKGRRAGVMKALTVDVEEFYQQCDPEKENLCLYGFPTEQWEVNLPAEEVPPEFPEPALGINFARDGMQEKDWLTLIAVHSDTWLLAVAFYFGAKCGLDKADRNKLFNMINDLPTVFEVVTGAAKKQTKEKSNHSSNESKSNSKRASESQGKHSNAIQPEDDNENDLVEDDDEHGETLCGACGENYTRDEFWICCDICEKWFHGKCVKITPARAAHIKQYKCPSCSNNKRARP* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01077 250 PANTHER CPG BINDING PROTEIN 8 249 IPR045104 GO:0006355|GO:0042393
Pte2g01077 250 SUPERFAMILY FYVE/PHD zinc finger 186 246 IPR011011 -
Pte2g01077 250 MobiDBLite consensus disorder prediction 156 171 - -
Pte2g01077 250 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Pte2g01077 250 MobiDBLite consensus disorder prediction 141 155 - -
Pte2g01077 250 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Pte2g01077 250 FunFam PHD finger alfin-like protein 188 244 - -
Pte2g01077 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Pte2g01077 250 CDD PHD_AL_plant 195 245 IPR044104 -
Pte2g01077 250 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pte2g01077 250 Pfam PHD-finger 196 244 IPR019787 -
Pte2g01077 250 SMART PHD_3 195 243 IPR001965 -
Pte2g01077 250 MobiDBLite consensus disorder prediction 141 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01077 Pte-Chr2 11661695 11663764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01077 1 251 Alfin-like Transcription Factor Family AT3G42790 69.565 1.99e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte2g01077 Alfin 7.9e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01077 K26274 - mof:131151574 407.527