Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01052 ATGAAACTAAGAGCCATTGGAGATGTGGACTTGAACAAGTCTGAGCCTTGGGATTTACCATGGAAAGCAAAAATGGGAGAAAAGGAATGGTACTTTTTCTGTGTCAGAGACAGAAAGTACCCAACTGGATTGCGAACCAACAGAGCCACTGAAGCTGGATACTGGAAAGCCACAGGGAAAGACAAGGAGATCTACAAAGGGAAATCTCTGGTTGGGATGAAGAAGACCTTAGTTTTTTACAGAGGAAGAGCACCAAAAGGAGTCAAATCTAACTGGGTGATGCACGAGTATAGATTAGAGGGCAACCTCTCTGTTGAAACCTTCCCAAAACTGCAAATGTAA 342 0.4327 MKLRAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKGKSLVGMKKTLVFYRGRAPKGVKSNWVMHEYRLEGNLSVETFPKLQM* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01052 113 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 100 - -
Pte2g01052 113 ProSiteProfiles NAC domain profile. 1 113 IPR003441 GO:0003677|GO:0006355
Pte2g01052 113 Gene3D NAC domain 1 110 IPR036093 GO:0003677|GO:0006355
Pte2g01052 113 Pfam No apical meristem (NAM) protein 3 99 IPR003441 GO:0003677|GO:0006355
Pte2g01052 113 SUPERFAMILY NAC domain 3 104 IPR036093 GO:0003677|GO:0006355
Pte2g01052 113 FunFam NAC domain-containing protein 100-like 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01052 Pte-Chr2 11428700 11429896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01052 5 110 NAC Transcription Factor Family AT5G39610 88.679 5.71e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte2g01052 NAM 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01052 - - cam:101502392 216.083