Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01044 ATGAGTTCTTTCTCTATTACAAGGAAAAAGACACCCTTCCAAAAGCACAGAGAAGAGGAAGAGGCGAAGAAAAAGAGAGCGGAAGATGAGACTGCTCGATTGTATCAAGAATTTGTTGAATCATTTCAAGGAGATAATGCTCCTGGATCAAAGACATTCGTCCGGGGAGGTACCATTAATCCAAATGAGAAAATGAAGAATGATTCTGAAGGTGAAAAGTCCAAAGATGGGGTTTCTGGTCCAAAGAAGGGGAGTAGGTATGTCCCATCTTTCTTACCACCTCCAATGGCAACCAAGCCAAAAGAATCTGAGAGGAAGAAAGAGGAGGAGAAGCTCAAGGAGAAAGAGAAAGGGAAAACTAGAAACATAGACAATTTCATGGAAGAACTTAAGCATGAGCAAGAAATGCGGGAAAGACGGAATCAAGATCGTGAGCACTGGCGTGATGGTCGACATGGTGAACATTCCACTTCTAGTCGCTTTGACGAACTGCCTGATGATTTTGATCCAAGTGGCAAAGGATCATTCGATGATGGTGATCCACAAACCACAAATCTCTATGTTGGAAACCTGTCACCAAAGGTTGATGAAAACTTCCTTCTTCGAACATTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATCATGTGGCCTAGGACTGAAGAGGAGAGAAGGCGGCAAAGAAATTGTGGCTTTGTTGCTTTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAGATGCAAGGAGTTGTGGTTTATGAATATGAGTTGAAGATTGGATGGGGCAAATCTGTTGCTTTGCCATCACAAGCACTGCCAGCTCCACCACCAGGACACATGGCTATTAGGAGTAAGGAGGGTGCCACAGTAATTTTGTCTGGTCCATCAGGTCCTCCTGTTACTTCTGTCCCTAATCAGAATTCTGAACTGGTGCTTACACCAAATGTTCCTGATATAATGGTCGTTCCCCCCGAGGATGATCATTTAAGGCATGTTATTGATACAATGGCTCTCTATGTTCTTGATGGTGGATGTGCTTTTGAACAAGCTATTATGGAGCGGGGTCGCGGGAATCCGCTTTTCAATTTTTTGTTTGAACTTGGAACTAAGGAGCATACTTACTATGTTTGGAGGCTTTATTCATTTGCTCAGGGTGATACACTTCAAAGATGGCGTACAGAGCCTTTCATTATGATAACTGGTAGTGGGAGATGGATCCCACCATCTCTGCCAACAGCAAAAAGTCCCGAGCATGAGAAGGATTCTACTTCTACATATGCTGCTGGAAGAAGCAGGCGTGTGGAGCCTGAATGCACCTTGACAGACTCACAGCGTGATGAGTTTGAGGACATGCTGCGCGCTTTAACTTTAGAAAGGAGTTTAATAAAAGAAGCTATGGCATTTGCTTTGGATAATGCTGATGCAGCTGGGGAGGTTGTCGAAGTTCTTACAGAATCCTTGACTCTCAAAGAAACCCCAATTCCAACTAAAGTTGCAAGGCTCATGCTTGTATCTGATATTCTTCATAATAGCAGTGCTCCGGTTAAAAATGCATCTGCATATCGTACCAAATTTGAAGCAACTCTACCAGACATAATGGAGAGCTTCAATGACCTTTATCGAAGCATAACAGGAAGGATCACTGCTGAGGCCTTAAAGGAGCGAGTACTGAAAGTGTTACAAGTATGGGCAGATTGGTTCCTGTTCTCAGATGCATATGTAAATGGTTTAAGAGCCACCTTTCTTCGGTCTGGGAACTCTGGAGTGATACCGTTTCACTCCCTCTGTGGTGATGCACCTGAAATTGAAAAAAAGACCACCTCTGGGGACAAAGGTGACGGTGATAACATGAACCCAGATGCTGCTTTGGCTATGGGAAAAGGAGCTGCTACGAGAGAGCTTATGAGTCTTCACCTTGGTGAACTAGAAAGGCGTTGCAGGCACAATGGGCTGTCCCTTGTTGGTGGCAGAGAAATGATGGTAGCTAGATTGCTAAGTCTAGAAGAGGCAGAAAGGCAAAGGGTATATGAGTTAGACAATGACTTAAAATATGCTCAGAGTCAATCAGGTTTAGGTAAATATTCAAATAGTCAAAAAGAGACTAGTGTTGAACCTGAACCAGTACTTATGTCTGGGTGGAACCACTATGGAGAGGATGACATGCAATCAGAAGTTAAAGCATCTGTACCTTTTCCCACAACTCTATCTATTCCACAACCTGAGCTGAAAGTCTTCACAAAGAAAGAGAAGAATGATCCTCTTTTGCCCGTCTCCAAATGGACTCGAGAGGATGATGAAAGTGACGATGAACAAAAGAAAAGTGGAAAGGGACTTGGATTGAGTTATTCATCATCAGGTAGTGAGAATGTTGATGGGGCTGGCAAGGCTGAGGAGATGGAAGCCGTAGCCGATACAAGTATATCAGCTCAATTCGATGGTGGAATGAATGAAGAGCTTAGACAGAAGTTAAGACGTCTGGAGGTTGATTTAATTGAATACCGTGAATCGCTTGAGGAGAAAGGAATGAAAAATTCAGAGGAGATTGAACGCAAAGTTGCAACTCTCAGGAAACGACTCCTATCTGAATATGGATTAGCAGATTCTGGCGAAGATGCTTCTGGAAATAAACGAACATCGTTGGAGAGGAAGGATTCTCGTGATGTATCTAGGAAACGACATCGTAGCCGGAGTAGAAGTGAGAGTCCACCTCGGAGATCTTCCAACAGGGAGAGGGAGCATGAAGTGGAGAGAGACCGGGACAGGTATAGAGAGTTAGAAAGTGAGAGGGTTAGAGACAGAGATCGGGAACGGGTTCGTGAGAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAGGGACAGAGGCAGAGAGAGAGAAAGAGACAGAGACAGAAGACGAAGGACTAAGTGA 2913 0.4401 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYQEFVESFQGDNAPGSKTFVRGGTINPNEKMKNDSEGEKSKDGVSGPKKGSRYVPSFLPPPMATKPKESERKKEEEKLKEKEKGKTRNIDNFMEELKHEQEMRERRNQDREHWRDGRHGEHSTSSRFDELPDDFDPSGKGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVVPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGTKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPEHEKDSTSTYAAGRSRRVEPECTLTDSQRDEFEDMLRALTLERSLIKEAMAFALDNADAAGEVVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSLCGDAPEIEKKTTSGDKGDGDNMNPDAALAMGKGAATRELMSLHLGELERRCRHNGLSLVGGREMMVARLLSLEEAERQRVYELDNDLKYAQSQSGLGKYSNSQKETSVEPEPVLMSGWNHYGEDDMQSEVKASVPFPTTLSIPQPELKVFTKKEKNDPLLPVSKWTREDDESDDEQKKSGKGLGLSYSSSGSENVDGAGKAEEMEAVADTSISAQFDGGMNEELRQKLRRLEVDLIEYRESLEEKGMKNSEEIERKVATLRKRLLSEYGLADSGEDASGNKRTSLERKDSRDVSRKRHRSRSRSESPPRRSSNREREHEVERDRDRYRELESERVRDRDRERVREKSGSRERDDHDRDRGRERERDRDRRRRTK* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01044 970 Coils Coil 817 837 - -
Pte2g01044 970 Gene3D - 442 588 IPR008942 -
Pte2g01044 970 MobiDBLite consensus disorder prediction 757 776 - -
Pte2g01044 970 MobiDBLite consensus disorder prediction 1 182 - -
Pte2g01044 970 MobiDBLite consensus disorder prediction 689 705 - -
Pte2g01044 970 SMART 558neu5 448 583 IPR006569 -
Pte2g01044 970 MobiDBLite consensus disorder prediction 11 35 - -
Pte2g01044 970 SMART cwf21_2 816 865 IPR013170 -
Pte2g01044 970 MobiDBLite consensus disorder prediction 863 970 - -
Pte2g01044 970 Gene3D - 96 267 IPR012677 -
Pte2g01044 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 265 IPR000504 GO:0003723
Pte2g01044 970 ProSiteProfiles SURP motif repeat profile. 333 376 IPR000061 GO:0003723|GO:0006396
Pte2g01044 970 Pfam cwf21 domain 823 863 IPR013170 -
Pte2g01044 970 MobiDBLite consensus disorder prediction 43 57 - -
Pte2g01044 970 MobiDBLite consensus disorder prediction 410 436 - -
Pte2g01044 970 Pfam CID domain 448 576 IPR006569 -
Pte2g01044 970 SUPERFAMILY ENTH/VHS domain 443 583 IPR008942 -
Pte2g01044 970 CDD cwf21_RRC1-like 816 865 IPR047491 -
Pte2g01044 970 SMART rrm1_1 185 261 IPR000504 GO:0003723
Pte2g01044 970 CDD RRM_SR140 183 266 IPR035009 -
Pte2g01044 970 SMART surpneu2 331 385 IPR000061 GO:0003723|GO:0006396
Pte2g01044 970 ProSiteProfiles CID domain profile. 441 586 IPR006569 -
Pte2g01044 970 Gene3D Surp module 319 388 IPR035967 GO:0003723|GO:0006396
Pte2g01044 970 Coils Coil 17 37 - -
Pte2g01044 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 258 IPR000504 GO:0003723
Pte2g01044 970 Pfam Surp module 331 383 IPR000061 GO:0003723|GO:0006396
Pte2g01044 970 MobiDBLite consensus disorder prediction 757 802 - -
Pte2g01044 970 MobiDBLite consensus disorder prediction 689 717 - -
Pte2g01044 970 PANTHER RNA PROCESSING PROTEIN LD23810P 1 902 - -
Pte2g01044 970 SUPERFAMILY Surp module (SWAP domain) 307 388 IPR035967 GO:0003723|GO:0006396
Pte2g01044 970 MobiDBLite consensus disorder prediction 65 80 - -
Pte2g01044 970 Gene3D - 816 867 - -
Pte2g01044 970 MobiDBLite consensus disorder prediction 875 889 - -
Pte2g01044 970 Coils Coil 909 929 - -
Pte2g01044 970 MobiDBLite consensus disorder prediction 901 970 - -
Pte2g01044 970 SUPERFAMILY RNA-binding domain, RBD 176 272 IPR035979 GO:0003676
Pte2g01044 970 MobiDBLite consensus disorder prediction 99 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01044 Pte-Chr2 11314398 11323152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01044 181 261 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.86e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01044 K12842 - gmx:100776093 1450.65