Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01027 ATGGCGTATCACCACCTACCTCAAGACCTTCGTCTCCATCACTTCACCCACCAACGGAGTCAACCTCAATTACCGACGGACAGTAACAACACTAACCACCCACCACTCCAGACCGCTCCTAACTGGCTTAACAACGCTCTCCTTCGTGCCCAATACGCCGACAGCAACAACACCAACCAGAACAGCACTCATGATAACGGCAACAGCAACGGGGGAGCCACGGATCACAACCATAACAGTGATACCAATTTGCTCAACCTTCACGGCAGCGCCTCGGACTCTCCTGGTGTCGTTTCGCAACCATCCAATCAGTGGCTCTGTCGCCCGATCCTTCACCGTAATCACAGTGACGTCATCGACGATGTAACTGCAGCTAACGGCAATTCCATCATCGGTGCTGCTTCCTTATCCCACGACTCTGCCGACGTGAAGACCGCTGGAGACACCCTCGATAACAAGCCCAAAGCACTGGTTGGAGACAGCAGTATTGGTGGAGGAGGAGGAGGAGACGGTGGTATGGTCAACTGGCAGTATGCTTGGTACAAGGCGGAGATTCTTGCGCACCCTTTGTACGAACAGCTGCTATCGGCACACGTAGCTTGCCTGCGAATCGCCACCCCCGTTGACCAGTTGCCTAGAATTGATGCGCAGCTGTCTCAGTCGCAGAATGTGGTGGCTAAGTACTCGAGCTTAGGACAAGGCGGCCAGAGCATAGTTGAGGATGATAAAGAGCTCGACCAGTTCATGTCGCATTACATTATGTTGCTATGTTCATTTAAAGATCAGCTGCAACAGCATGTCCGAGTCCATGCAATGGAAGCTGTAATGGCCTGTTGGGAGATAGAGCAATCCTTACAAAGTTTAACAGGGGTTTCGCCAGGTGAAGGCACTGGTGCAACAATGTCCGATGATGAAGATGATCAAGTAGATAGTGATGTCAACCTGTTTGAAGGCAATTTGGATGGTCCAGACAACATGGGATTTGGTCCTCTGGTTCCAACAGAGAATGAAAGATCTCTCATGGAGCGTGTGAGGCAAGAATTGAAGCATGAACTGAAACAGGGCTATAAGGAGAAAATTGTGGATGTAAGAGAGGAAATTCTGCGCAAGAGGAGAGCAGGGAAGCTTCCTGGGGACACCACCTGTGTCTTGAAAGCTTGGTGGCAAACACATGCCAAATGGCCTTATCCCACTGAAGAAGATAAAGCACGGTTAGTGCAGGAAACAGGATTGCAGTTGAAACAGATAAACAACTGGTTCATTAATCAGCGGAAGAGAAACTGGCACAGCAATACTTCATCTTCTACAGTCTTGAAGTGCAAACGTAAAAGGTGA 1335 0.4966 MAYHHLPQDLRLHHFTHQRSQPQLPTDSNNTNHPPLQTAPNWLNNALLRAQYADSNNTNQNSTHDNGNSNGGATDHNHNSDTNLLNLHGSASDSPGVVSQPSNQWLCRPILHRNHSDVIDDVTAANGNSIIGAASLSHDSADVKTAGDTLDNKPKALVGDSSIGGGGGGDGGMVNWQYAWYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLSQSQNVVAKYSSLGQGGQSIVEDDKELDQFMSHYIMLLCSFKDQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDVNLFEGNLDGPDNMGFGPLVPTENERSLMERVRQELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTCVLKAWWQTHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNTSSSTVLKCKRKR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01027 444 CDD homeodomain 370 431 IPR001356 GO:0003677
Pte2g01027 444 SMART HOX_1 369 434 IPR001356 GO:0003677
Pte2g01027 444 SUPERFAMILY Homeodomain-like 369 432 IPR009057 -
Pte2g01027 444 ProSiteProfiles ELK domain profile. 347 367 IPR005539 GO:0003677
Pte2g01027 444 SMART KNOX1_2 179 223 IPR005540 GO:0003677|GO:0005634
Pte2g01027 444 Pfam KNOX2 domain 239 289 IPR005541 GO:0003677|GO:0005634
Pte2g01027 444 FunFam homeobox protein knotted-1-like 3 isoform X1 368 429 - -
Pte2g01027 444 SMART KNOX2_2 235 290 IPR005541 GO:0003677|GO:0005634
Pte2g01027 444 MobiDBLite consensus disorder prediction 17 40 - -
Pte2g01027 444 Pfam KNOX1 domain 181 222 IPR005540 GO:0003677|GO:0005634
Pte2g01027 444 SMART ELK_2 347 368 IPR005539 GO:0003677
Pte2g01027 444 MobiDBLite consensus disorder prediction 56 100 - -
Pte2g01027 444 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
Pte2g01027 444 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
Pte2g01027 444 Gene3D - 366 437 - -
Pte2g01027 444 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 430 - -
Pte2g01027 444 Pfam ELK domain 347 368 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01027 Pte-Chr2 11049653 11053111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01027 1 445 Homeobox Transcription Factor Family AT5G25220 61.734 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte2g01027 KNOX2 5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01027 - - qsa:O6P43_015734 664.07