Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00988 ATGGACCTCACTGAAGAAGTTAGGGCAGCTCACAAGCGAGAATTCGCTGATTTCCTAGACCAGGATATATGGAAAGCTATCTATGGGCAAAAAATCAAATCTATGATCGACCTCAATCGCCGCCGTCTCATAGTCAGCATTTCCGATCTCCATAGTTTCCGTGATTTGGGTAATCGGATTCTGAAAAACCCAAGCGAATATATACAACCATTCTGCGATGCAGTGACTGATGCCACTCGTGCTATAAAAAAGGAGTATCTGAAGGAAGGTGAACAAATACTTGTGGGGTTTGAAGGCCCTTTTGTTTCGCGACGTGTCACACCCAGGGAGCTACTGTCTGAGTTCATTGGTACTATGGTTTGTGTTGAAGGCATTGTTACCAAATGCTCACTTGTGAGACCAAAGGTGGTTAAAAGTGTTCATTTCTGTCCTACAACAGGAAACTTTACCACTCGAGAATATCGGGACATCACATCCAATATGGGTTTGCCCACCGGTTCTGTGTATCCCACTAGAGATGATAATGGGAATCTGCTTGTGACTGAATATGGATTGTGCAAATATAAAGATCATCAAACCTTATCTATGCAAGAAGTTCCAGAGAACTCTGCCCCAGGTTTGCTTCCTCGATCAGTAGATGTCATCATGGAGGATGATCTCGTGGATTCTTGCAAGCCTGGAGATCGTGTTGCTATTGTAGGATTATATAAAGCTCTTTCTGGGAAGGGTAAGGGAAGTGTAAATGGAGTCTTCAGGACTGTTCTTATAGCGAATAATGTTTCTCTCCTCAACAAAGAGGCAAATGCACCAATCTATGGTGCTGAAGATCTCAGCAATATCAAAAAGATAGCTGAGAGAGGTGATGTTTTTGACCTACTTGGAAATTCTCTTGCACCTTCTATATATGGGCATTCATGGATAAAGAAGGCAGTGATTCTGTTGATGCTTGGTGGTGTGGAGAAAAACTTGGAGAACGGAACACACCTGAGAGGGGACATTAACATGATGATGGTTGGAGATCCTTCTGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAATATTGCTCCCTTGGCAATATCAACCACTGGTAGAGGGTCATCTGGTGTTGGTTTGACAGCTGCAGTTACATCAGATCAAGAAACAGGTGAAAGAAGACTAGAAGCCGGTGCGATGGTCCTCGGTGATCGAGGCGTTGTTTGCATTGATGAATTTGATAAGATGAATGATCAAGATCGTGTTGCTATTCATGAGGTTATGGAGCAGCAGACAGTAACGATTGCCAAAGCCGGTATTCATGCCTCATTGAATGCTCGGTGCAGTGTAGTTGCTGCTGCCAATCCTATATATGGGACTTATGATCGCTCGTTGACTCCAACAAAAAATATTGGACTCCCAGACTCTTTGCTTTCTCGGTTTGATTTGCTTTTCATTGTACTGGACCAAATGGATCCTGATATTGATCGTCATATCTCAGAACATGTCTTACGTATGCACCGGTATCGATCTGCAATTGATGGAGGCGAGGCAACTCTTGAGGGCTCTAGATATGAGAGAGAAGATGAAGCTGATGTTGACTCCTCTGTCTTCGTGAAGTTTAACCGTATGCTACATGGGAAAAGGATTGGAAGGGCACGAAAGCAAGACACTCTTACCATTAAGTTTCTCAAGAAGTACATCCACTACGCAAAGAACAGAATCCAACCAGAATTGACTAAGGAGGCATCTGATCACATTGCTGAAGAATATGCTAAGCTCAGAAATAGCAATTCTAATGAAAAGACTGGAGGAACGCTTCCTATCACTGCCAGAACATTAGAAACAATAATACGTCTATCAACTGCACATGCCAAATTGAGATTGTGCCGACAGGTCTTAATATCTGATGTTGAAGCTGCCCTTGAAGTTCTCAATTTTGCAATATATCACAAGGAATTAACTGAAATGGAGAAGCGGGAGCAACAGAGGGAGAAAGAAACAGAAAGAAAGCAAGCTGATGATCAACCTGGTGAAACCAATAGACGTCGCCGTGGAAGCAGTAGAGGGTCAACCACAGAACCTATGGAAATTGATGAACACGCTCCAACTGCTCAACCTGAAAGTAATCTTACACAAGAGAGAATAGAAGCATTTAATGCACGATTTGGGCAGCATATGCGCACAAACCATTTGGATTTTATACAGATTGCTGATATTCAAAATATTGTCAATCAAGGAGCAGATTTTTACTACACTATGCCAGAGATCTTAGCCTTACTAGAGGTCCTTTATAAATTATTGCTGGAATACTTGGAGTCTTTGTTCAATCTGAATTTCCTTGGTTTAACATACACAATGTTTGAAATTTTTTATCAGAAGCTGCAAGATGACAATAGAGTTATGATGGTTGACGGGTCTGCACCTCTCCACTTGGAGAAATGGCTCGTAGTTTTATGA 2436 0.4212 MDLTEEVRAAHKREFADFLDQDIWKAIYGQKIKSMIDLNRRRLIVSISDLHSFRDLGNRILKNPSEYIQPFCDAVTDATRAIKKEYLKEGEQILVGFEGPFVSRRVTPRELLSEFIGTMVCVEGIVTKCSLVRPKVVKSVHFCPTTGNFTTREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGLLPRSVDVIMEDDLVDSCKPGDRVAIVGLYKALSGKGKGSVNGVFRTVLIANNVSLLNKEANAPIYGAEDLSNIKKIAERGDVFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLENGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLGDRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSAIDGGEATLEGSRYEREDEADVDSSVFVKFNRMLHGKRIGRARKQDTLTIKFLKKYIHYAKNRIQPELTKEASDHIAEEYAKLRNSNSNEKTGGTLPITARTLETIIRLSTAHAKLRLCRQVLISDVEAALEVLNFAIYHKELTEMEKREQQREKETERKQADDQPGETNRRRRGSSRGSTTEPMEIDEHAPTAQPESNLTQERIEAFNARFGQHMRTNHLDFIQIADIQNIVNQGADFYYTMPEILALLEVLYKLLLEYLESLFNLNFLGLTYTMFEIFYQKLQDDNRVMMVDGSAPLHLEKWLVVL* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00988 811 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Pte2g00988 811 Gene3D - 109 239 IPR012340 -
Pte2g00988 811 Gene3D - 272 663 IPR027417 -
Pte2g00988 811 Gene3D - 3 99 - -
Pte2g00988 811 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Pte2g00988 811 CDD MCM3 292 640 - -
Pte2g00988 811 Pfam MCM AAA-lid domain 555 638 IPR041562 -
Pte2g00988 811 Pfam MCM N-terminal domain 12 84 IPR027925 -
Pte2g00988 811 Coils Coil 643 664 - -
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 629 644 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Pte2g00988 811 Pfam MCM OB domain 109 238 IPR033762 -
Pte2g00988 811 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 8 679 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pte2g00988 811 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pte2g00988 811 Gene3D - 135 189 - -
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pte2g00988 811 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pte2g00988 811 MobiDBLite consensus disorder prediction 651 688 - -
Pte2g00988 811 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Pte2g00988 811 MobiDBLite consensus disorder prediction 651 703 - -
Pte2g00988 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 653 IPR027417 -
Pte2g00988 811 SMART mcm 104 642 IPR031327 GO:0003677|GO:0005524|GO:0032508
Pte2g00988 811 SMART AAA_5 331 484 IPR003593 GO:0016887
Pte2g00988 811 FunFam DNA helicase 135 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00988 Pte-Chr2 10544574 10550332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00988 1 574 Core DNA Replication Machinery Family AT5G46280 78.993 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00988 K02541 - jre:108990186 1212.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00988 2 10544574 10550332 Pte2g00988 2 10544574 10550332 RCT