Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00963 ATGGCCAAGAAGAAGAAGTCTCTCTCTTCCTCTGCTTCTGCTTCTAACGCTTCAAATGAAAAAATGGTACTGCTGAAATCAAGCAAGGATTCAAAAAGGATGGGGCAGCAGCCAAGACTGAGTGGTGTGGTGAAGAGGAAAACTTCAGGTAGAAAACCTGCTAAGCAAAAGAAGAGAAAAGAAAAGATTGATGCCAAGAAGCCGAAGAAGCCTCCAACTGCCTTTTTCTACTTCTTGGAGGATTTTCGTAAGGAATTTCAAGAGAAAAACCCAGACATCAAATCTATGCGTGATATTGGCAAGGCATGTGGAGAAAAATGGAAAACAATGACGTATGAGGAAAAGGTTCAATATTATGACATAGCCACGGAGAAGAGGGCAGAGTTTGACAGAGCAATGGCAGAATATAACAAGAGAAAAGAAAACGGCGAGGATGAAGAAACTGCCGAGGATACAGAGTCTGATGAATAG 471 0.4183 MAKKKKSLSSSASASNASNEKMVLLKSSKDSKRMGQQPRLSGVVKRKTSGRKPAKQKKRKEKIDAKKPKKPPTAFFYFLEDFRKEFQEKNPDIKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMAEYNKRKENGEDEETAEDTESDE* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00963 156 MobiDBLite consensus disorder prediction 1 69 - -
Pte2g00963 156 MobiDBLite consensus disorder prediction 136 156 - -
Pte2g00963 156 Gene3D High mobility group box domain 61 152 IPR036910 -
Pte2g00963 156 Pfam HMG (high mobility group) box 68 137 IPR009071 -
Pte2g00963 156 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 30 155 IPR031061 -
Pte2g00963 156 SUPERFAMILY HMG-box 53 136 IPR036910 -
Pte2g00963 156 MobiDBLite consensus disorder prediction 45 65 - -
Pte2g00963 156 SMART hmgende2 67 138 IPR009071 -
Pte2g00963 156 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 68 137 IPR009071 -
Pte2g00963 156 Coils Coil 126 146 - -
Pte2g00963 156 MobiDBLite consensus disorder prediction 1 35 - -
Pte2g00963 156 CDD HMG-box_AtHMGB1-like 69 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00963 Pte-Chr2 9803392 9808821 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte2g00963 HMG_box 6.8e-19 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00963 - - tcc:18596526 174.096