Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00860 ATGGTTTTAGCATCCCAAACCCAAAACCAAACTGATCAGCTTCCATTCAATGAGAATGACTCACAAGATATGGTCATATACCAAGTTCTAAACGAGGCTAATACCCTTAGTAACACTTACATACAACAAAGACAGCAAATTGGCTCACAGCAACATGGCCTTGAGGTGACCAGAAACATTGGGAAGAAGCACTATAGGGGCGTGAGGCGCCGGCCATGGGGGAAATACGCAGCGGAGATTCGTGATTCTTCGCGGCATGGTGCACGTGTATGGCTAGGCACGTTTGAAACAGCCGAAGGAGCTGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAGAGGAGCTAAGGCTCTTCTTAATTTTCCAGCTGAATTTGTGGCTGCTTCCTCCGTGCAAATATTACCGAAGGCATTAAGGTCACAAAATTCAAACCACCATGACTCTGATTCAAGTACTGGAAGCAGCTCTAACACAAATCGGAATTTGTCACTTGGATCACCATCAGAAGAAGCAATTAGCAGAACAGCAACGTTGCTGCCTCTTTGA 546 0.4542 MVLASQTQNQTDQLPFNENDSQDMVIYQVLNEANTLSNTYIQQRQQIGSQQHGLEVTRNIGKKHYRGVRRRPWGKYAAEIRDSSRHGARVWLGTFETAEGAALAYDRAAFKMRGAKALLNFPAEFVAASSVQILPKALRSQNSNHHDSDSSTGSSSNTNRNLSLGSPSEEAISRTATLLPL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00860 181 SMART rav1_2 64 128 IPR001471 GO:0003700|GO:0006355
Pte2g00860 181 MobiDBLite consensus disorder prediction 140 181 - -
Pte2g00860 181 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Pte2g00860 181 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Pte2g00860 181 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Pte2g00860 181 Gene3D AP2/ERF domain 63 124 IPR036955 GO:0003700|GO:0006355
Pte2g00860 181 MobiDBLite consensus disorder prediction 140 173 - -
Pte2g00860 181 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Pte2g00860 181 FunFam Ethylene-responsive transcription factor 2 63 124 - -
Pte2g00860 181 ProSiteProfiles AP2/ERF domain profile. 64 122 IPR001471 GO:0003700|GO:0006355
Pte2g00860 181 PANTHER DNA-BINDING DOMAIN 28 156 IPR044808 GO:0003700|GO:0009873
Pte2g00860 181 SUPERFAMILY DNA-binding domain 64 124 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00860 Pte-Chr2 7777340 7778483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00860 14 133 AP2-EREBP Transcription Factor Family AT3G23240 56.098 1.87e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte2g00860 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00860 K13433 - qsa:O6P43_012708 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00860 2 7777340 7778483 Pte2g00860 2 7777340 7778483 RCT