Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00852 ATGGGGGGTTTGATTGATCTCAACGCTACGGAGGATGATGAAACCCCTTCATCTGCTTCCACTGTTTCTTCATCCTCTGCTTCGGGTTTAAGTTTCACTGCTACTGCTTCAGCTTCTTTAACGACTGAGGGTTCTTCTTCGGTTTGCTTGGAGCTATGGCACGCTTGTGCTGGACCGTTGATCTCTTTGCCTAAGAAAGGCAGTCTCGTGGTATACTTTCCGCAAGGTCACTTTGAACAGATTCCGGATTTCCCTTCTGCTCATCCATACAATATTCCTCCCCAAGTTTTCTGTCGGGTTGTTGATGTCAAGCTCCACGCCGAAGAAGGCAGTGATGAGGTTTATTGTCAAGTTTCTCTAGTACCTGAAATGGAGGTAATTCCTCAAAAATTACGAGAGGCAGAAACTAATGCTGATGAAGAAGGGGATACTCATGCAGTTGCTAAGTCATCTACACCTCATATGTTCTGCAAGACGCTCACTGCATCTGACACTAGTACTCATGGAGGATTTTCAGTTCCCCGTCGAGCAGCTGAAGATTGCTTCCCTCCCCTTGATTACAATCAACAGAGACCTTCCCAAGAGCTTGTAGCCAAGGATCTGCATGGCATGGAATGGAGGTTCCGGCATATATACAGGGGACAACCACGACGGCATTTGCTCACAACTGGATGGAGTGCATTTGTAAACAAGAAGAAGCTTGTTTCTGGAGATGCTGTGCTTTTCTTAAGGGGTGAGGATGGGGAGCTGAGGTTGGGAATCCGGAGAGCATCTCAATTGAAAGGTGGAGGTGGCCCATCACTTCCTTTTGGCTTGCAGTTGAAGTCTAGTTCTCTGCTCGACGTGGTCAATGCTGTATCTACTGGATGCTCCTTCAACATTTGTTACAATCCTAGAGCGAGCTTATCAGAGTTCATTGTACCTCTTAATAAGTATCTTCGAAGCCTTGATCAGTCTTTCTTGATTGGAATGAGGTTCAGAATGCGTTTCCAAGCTGATGATGCTGCTGAGAGAAGGTGTACCGGTATAATAGCTGGAATTAGTGATATGGATCCTGTTAGATGCCCTGGATCAAAGTGGAAGAGCCTTTTGGTGAGGTGGGATGATCTTGAGGCCACTAGACATAACAGGGTTTCTCCTTGGGAAATTGAGCCTTCTGGCTGCGGTTCCAATTCAAACAGTTTGATGGTTACTGGTTTGAAGAGGACTAGGCTGGAACTGCCTTCGGATAAACAAGAATTTCCAATTCCCCATGGAATGGGAGTATCAGACTTTGGGGAATCTTTAGGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTATTAATCATCATCTCTATGATGGTGTGGCTTCTCAGAATCGGAATTTATCTGAGATAAGGAGATGCTACCGCGGGTCCAACCTTGGCGGAGCTGTAATGGGAGGTAGTATTAGAGCTCCACAGATGCATTCTGACATTTCCTGTAATGCAAAAGACTTTGGTGAATCTTTGGGTTTCCCAAAGAAGGTCTTGCAAGGTCAAGAAATCTTTCCAGTCCCCCTTTATGGAAGAGCCTTACCAGTCACTGAGGCTTGTGAAAATAGTCGACAAGATATTTATGATGGGTGTCAAGTGTTGAGCTCTAGAAATAGATGGTCAACCCATGTACCTGGCAGTTCTTCACATCTGAAATTGCACCCATCTACACAGCCTCCACCACTGTCATCTCCATCATCCGTGTTAAAGTTTCGGCAAGCTATTAATTCAAGTTCCAACTGTTATCCCACGTATAACATGAATAGCAGCCACATCCATGTTCCATGTGCATCTGATGCAAATGGTGGAAAGCTGCCATCATCTTCATTCAATCAACCTATATTCAGTGATGAGGTTCAGGCAGGGTCGAATCCTTTTGGTTTGTCGAAAAAGCGAAATGAAATTTGCATTTCGCAACCTCAGGTGTCTCAGACAGGCTATAATAACAGAAAAGAGACCGTTTCCTCATGCAAAAGTAGCTGCAGACTGTTTGGTTTCTCGTTAATTCAAGAAAATGACACGGAGAATGAGGATGATGTCGGTGCAATCTCTGGTCCTTTAAATTCTGGGTTTTCCTACCTCATGCTGGAGAGCAATTCAATCAAGACTCTCCCGTGA 2139 0.4497 MGGLIDLNATEDDETPSSASTVSSSSASGLSFTATASASLTTEGSSSVCLELWHACAGPLISLPKKGSLVVYFPQGHFEQIPDFPSAHPYNIPPQVFCRVVDVKLHAEEGSDEVYCQVSLVPEMEVIPQKLREAETNADEEGDTHAVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGMEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRASQLKGGGGPSLPFGLQLKSSSLLDVVNAVSTGCSFNICYNPRASLSEFIVPLNKYLRSLDQSFLIGMRFRMRFQADDAAERRCTGIIAGISDMDPVRCPGSKWKSLLVRWDDLEATRHNRVSPWEIEPSGCGSNSNSLMVTGLKRTRLELPSDKQEFPIPHGMGVSDFGESLGFQKVLQGQEILGINHHLYDGVASQNRNLSEIRRCYRGSNLGGAVMGGSIRAPQMHSDISCNAKDFGESLGFPKKVLQGQEIFPVPLYGRALPVTEACENSRQDIYDGCQVLSSRNRWSTHVPGSSSHLKLHPSTQPPPLSSPSSVLKFRQAINSSSNCYPTYNMNSSHIHVPCASDANGGKLPSSSFNQPIFSDEVQAGSNPFGLSKKRNEICISQPQVSQTGYNNRKETVSSCKSSCRLFGFSLIQENDTENEDDVGAISGPLNSGFSYLMLESNSIKTLP* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00852 712 Gene3D - 320 392 - -
Pte2g00852 712 MobiDBLite consensus disorder prediction 551 574 - -
Pte2g00852 712 MobiDBLite consensus disorder prediction 11 26 - -
Pte2g00852 712 CDD B3_DNA 154 256 IPR003340 GO:0003677
Pte2g00852 712 MobiDBLite consensus disorder prediction 1 26 - -
Pte2g00852 712 SUPERFAMILY DNA-binding pseudobarrel domain 148 262 IPR015300 -
Pte2g00852 712 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 683 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte2g00852 712 SMART B3_2 156 258 IPR003340 GO:0003677
Pte2g00852 712 ProSiteProfiles B3 DNA-binding domain profile. 156 258 IPR003340 GO:0003677
Pte2g00852 712 FunFam Auxin response factor 154 258 - -
Pte2g00852 712 FunFam Auxin response factor 319 389 - -
Pte2g00852 712 Pfam B3 DNA binding domain 156 257 IPR003340 GO:0003677
Pte2g00852 712 Pfam Auxin response factor 283 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte2g00852 712 Gene3D - 154 257 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00852 Pte-Chr2 7667032 7672957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00852 45 442 B3 DNA Binding Superfamily AT5G60450 54.964 1.94e-140 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte2g00852 B3 2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00852 K14486 - gmx:100810458 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00852 2 7667032 7672957 Pte2g00852 2 7667032 7672957 RCT