Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00838 ATGGCCCCAAGAGCTAAGGCGACGGCCGGTGTTGAAAAATCCAATGTTAACGTGAAGGAGGTGCATTTTAGAGGGGTGAGGAAGAGGCCGTGGGGAAGGTATGCTGCTGAGATCAGAGATCCCGGCAAGAAAAGCCGTGTTTGGCTGGGCACTTTTGACACGGCTGAAGAAGCTGCACGAGCATACGATGCCGCAGCTAGAGAGTTCCGTGGTGCGAAGGCCAAGACCAACTTTCCTTCGCCTTCTGAGAACAACGTCTATGGTAAGAACGATAACCAGAGCAGTCCTAGCCAGAGCAGTGTGGTTGAGTCCTCCAGCCTTGAGCCGGCTCTGATTGTTGATTCTTCACCGATGGATCTCAACTTGGCGGAAGCCACAGCCACGGTGAGGTTTCCTTTTCATCAAATTCAGGCGATGGGTGGCGCTTTCACCAATATTTTCTATTACGACGCGCTCTTGCGTGCTGGCATGATCGGCAACCACGGCCAAAACCAACAACTGAGATTGGATCCGTTTTACAGCCTTCAACGTTTTCAACATCTTCCCAAGGTAGCGTCGCCCAACGGTTTCCCGGCAGCCGACGGTGGTGCAAAGAGTGATTCTGACTCTTCCTCTGTGATCGATCTCAACCATGATAATCCAAAGCCACGTTTGGCATACGGGCTCGACCTCAATCTACCTCCACCGTCTGAGACGGCGTAA 702 0.5256 MAPRAKATAGVEKSNVNVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPSPSENNVYGKNDNQSSPSQSSVVESSSLEPALIVDSSPMDLNLAEATATVRFPFHQIQAMGGAFTNIFYYDALLRAGMIGNHGQNQQLRLDPFYSLQRFQHLPKVASPNGFPAADGGAKSDSDSSSVIDLNHDNPKPRLAYGLDLNLPPPSETA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00838 233 SUPERFAMILY DNA-binding domain 22 79 IPR016177 GO:0003677
Pte2g00838 233 MobiDBLite consensus disorder prediction 77 103 - -
Pte2g00838 233 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pte2g00838 233 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pte2g00838 233 MobiDBLite consensus disorder prediction 73 103 - -
Pte2g00838 233 MobiDBLite consensus disorder prediction 186 233 - -
Pte2g00838 233 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Pte2g00838 233 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Pte2g00838 233 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 165 - -
Pte2g00838 233 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Pte2g00838 233 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Pte2g00838 233 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pte2g00838 233 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00838 Pte-Chr2 7471692 7473440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00838 19 171 AP2-EREBP Transcription Factor Family AT5G44210 48.408 1.08e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte2g00838 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00838 K09286 - fve:101314350 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00838 2 7471692 7473440 Pte2g00838 2 7471692 7473440 RCT
Pte15g01729 15 17976667 17979003 Pte2g00838 2 7471692 7473440 RCT
Pte17g00472 17 6361256 6361960 Pte2g00838 2 7471692 7473440 RCT