Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00728 ATGGGGAGAGGGAAGATTGTGATAAGAAGGATTGACAATTCCACAAGCAGACAGGTGACTTTCTCAAAGAGAAGAAGCGGACTACTGAAGAAAGCAAAGGAGTTGTCTATCCTTTGTGATGCAGAAGTTGGATTAATCGTTTTCTCCAGCACCGGCAAGCTCTATGATTATGCCAGTACCAGCATGGGAGCAGTTATCGAACGTTACAAGAGGCTCAAGGAGGAACAACATCAACTCAAGAATTCTAACTCCGAGCTCAATTTTTGGCAGAGGGAGGTAACGACATTGAGACAACAACTGCAGCAGTTACAAGAATGCCACAGGCAATTGATCGGTGAAGAACTCTCAGGCATGAACATTAAAGATCTGCAAAATTTAGAAAATCAACTGGAAATGAGTTTGAAAGGTGTCCGTACGAAGAAGGTACCCATTTTTCTCAGCAGTAAATATGATGGAAATCTAATTCATCAGGAGAACGTTGAACTCCATAGAAAGCTAGAGTATATTCCCAAAGAAAATACAGAACTATGGAACAAGGCTAATGGATCAAAGGATATGAACGAAGAAAGCACCACACGCCATATTTCTACTACTATTGGATGTGATTTACATGTACCAACTGCTCTCAAGCTGAGCCAGCCACAGTCTCAACACATTGAACCGCCAGCTAGAGCAATGAAATTGGGTGTAGCACACTTATTACCAAAGTTTACATCACTTGGTATCAGAGCAAGTTTGAGATCACATGAGCACATTGCTTGGAACGCGCAGCAATACAAACCAAAACTTGTTCAATTGAATGGCCACCAACAAGGTTTTTGGAAACTTAGAAAAGTCAGCAGGAGAGATAAGGGATTAGTGAAAGAGATACACAACTTTGTGCAGTAA 888 0.4133 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGLIVFSSTGKLYDYASTSMGAVIERYKRLKEEQHQLKNSNSELNFWQREVTTLRQQLQQLQECHRQLIGEELSGMNIKDLQNLENQLEMSLKGVRTKKVPIFLSSKYDGNLIHQENVELHRKLEYIPKENTELWNKANGSKDMNEESTTRHISTTIGCDLHVPTALKLSQPQSQHIEPPARAMKLGVAHLLPKFTSLGIRASLRSHEHIAWNAQQYKPKLVQLNGHQQGFWKLRKVSRRDKGLVKEIHNFVQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00728 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte2g00728 295 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte2g00728 295 ProSiteProfiles K-box domain profile. 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte2g00728 295 Coils Coil 120 140 - -
Pte2g00728 295 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pte2g00728 295 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Pte2g00728 295 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Pte2g00728 295 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte2g00728 295 Pfam K-box region 83 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte2g00728 295 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte2g00728 295 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte2g00728 295 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte2g00728 295 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte2g00728 295 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte2g00728 295 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pte2g00728 295 Coils Coil 72 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00728 Pte-Chr2 5948305 5958983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00728 1 225 MADS-box Gene Family AT4G37940 55.310 3.32e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte2g00728 K-box 4.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00728 K09264 - qsa:O6P43_031685 286.189