Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00727 ATGGGGAGGGGGAAGATTGTGATAAGAAGGATTGACAATTCCACAAGCAGACAGGTGACTTTCTCGAAGAGAAGAAGCGGACTACTGAAGAAAGCAAGAGAGCTGTCCATCCTTTGTGATGCAGAAGTTGGATTAATCGTTTTCTCCAGCACCGGCAAGCTCTACGATTATGCAAGCACAAGCATGAGAGCAGTTATCGATCGTTACAGCAAGCTAAAGGAGGAACGCCATCAACTCATGAATTCTGACTCCGAGGTCAAGTTTTGGCAAAGGGAGGCAGCAACGTTGAGACAAGAACTGCAGCAATTACAAGAATACCACAGGCAATTGATGGGTGAAGAACTTTCGGGATTGAATATTAAAGATCTCCAAAATTTAGAAAATCAACTGGAGATAAGTTTGAAGGGTGTCCGGATGAAGAAGGATCAAATTCTAACTGAAGAAATAAAAGAATTGAAACAAAAGGAGAATCTTATTTATGAAGAAAATGTTGAACTCTACAGAAAGATAGACATTTTTAGTAGAGAAAACACAGAACTAAGAAACAAGGTTCACAGATCAAGGAACTTGAATGAAGGAAGCACAACACGAAGTATTTCATACACCAATAGTGGGCATGATTTACTAGTGCCAACTTCTCTCCAACTTAGCCAACCACAGGCTCATCCCAGTGAACCACGCATAGCAATGAAACTGGGGTATGACTGGTGA 711 0.4121 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIVFSSTGKLYDYASTSMRAVIDRYSKLKEERHQLMNSDSEVKFWQREAATLRQELQQLQEYHRQLMGEELSGLNIKDLQNLENQLEISLKGVRMKKDQILTEEIKELKQKENLIYEENVELYRKIDIFSRENTELRNKVHRSRNLNEGSTTRSISYTNSGHDLLVPTSLQLSQPQAHPSEPRIAMKLGYDW* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00727 236 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte2g00727 236 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte2g00727 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
Pte2g00727 236 Coils Coil 79 113 - -
Pte2g00727 236 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pte2g00727 236 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Pte2g00727 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte2g00727 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte2g00727 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte2g00727 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte2g00727 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte2g00727 236 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte2g00727 236 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pte2g00727 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte2g00727 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00727 Pte-Chr2 5926032 5932332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00727 1 237 MADS-box Gene Family AT2G14210 61.345 1.36e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte2g00727 K-box 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00727 K09264 - tcc:18608170 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00727 2 5926032 5932332 Pte2g00727 2 5926032 5932332 RCT