Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00720 ATGAACAATAACATGGAGACCCAAATGGAAGAGGAAGAGGATGTCGGTGGCGGTGATGAAGAGTCCATAGACGATACCCACATGCAGTTTGATGAAGGTGGTGATGGGGTTGCCGTTACTTCCTTGAATGGTGTCCCTGATGTTCCTGACAATTCCATGTTTGTAGGATCCGATTATCCGTTAGCTACGGCAAATGGCGGTTCTGACCAGCTGACCCTTTCGTTTAGGGGAGAGGTTTATGTGTTCGATGCTGTTCCGCCTGAGAAGGTGCAATCGGTGTTGTTACTTTTAGGGGGATATGAAGTTCCTTCTGCTATTCCTGCACTTGGTGGACTATGTATGCAACGGGGCATTAATGACCTCTGTGGAAGATCTACACAACCTCATAGAGCCGCATCTTTGATAAGGTTTAGAGAAAAAAGAAAAGAACGGTGCTATGACAAGAAAATTCGTTACACAGTGCGGAAAGAAGTTGCTCTCAGGATGCAGCGTAAAAAGGGGCAGTTTGCTTCAGCAAGGTCAACTTGTGATGAAATGGGCTCAGATTCTTCCAATCTGAGTACACAGGGTTCTGGAGATGAGAACTTTCCTGAAACAATATGTACACATTGTGGTATCAGTTCGAAGTCCACTCCTATGATGCGTCGGGGTCCTGCTGGACCAAGGACTCTTTGTAATGCATGCGGACTCAAATGGGCTAACAAGGGAGTTTTGAGGGATCTAACCAAAGTTCCTAGTGTTTGCAACTCCGATACTGCGTCAAATCCAACTGAACAGAATGAAGTTAATGCTAATGAGTCAAATACCGCAAGAACAGATGCGGCAGTAAGCGCCCCTGCAGACTGCAACAACTCTACCTTGATTGCCGAAACATAA 876 0.4589 MNNNMETQMEEEEDVGGGDEESIDDTHMQFDEGGDGVAVTSLNGVPDVPDNSMFVGSDYPLATANGGSDQLTLSFRGEVYVFDAVPPEKVQSVLLLLGGYEVPSAIPALGGLCMQRGINDLCGRSTQPHRAASLIRFREKRKERCYDKKIRYTVRKEVALRMQRKKGQFASARSTCDEMGSDSSNLSTQGSGDENFPETICTHCGISSKSTPMMRRGPAGPRTLCNACGLKWANKGVLRDLTKVPSVCNSDTASNPTEQNEVNANESNTARTDAAVSAPADCNNSTLIAET* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00720 291 CDD ZnF_GATA 200 243 IPR000679 GO:0006355|GO:0043565
Pte2g00720 291 MobiDBLite consensus disorder prediction 171 193 - -
Pte2g00720 291 MobiDBLite consensus disorder prediction 247 291 - -
Pte2g00720 291 PANTHER GATA TRANSCRIPTION FACTOR 28 8 284 IPR045280 GO:0006355
Pte2g00720 291 Pfam GATA zinc finger 201 237 IPR000679 GO:0006355|GO:0043565
Pte2g00720 291 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Pte2g00720 291 ProSitePatterns GATA-type zinc finger domain. 201 228 IPR000679 GO:0006355|GO:0043565
Pte2g00720 291 ProSiteProfiles GATA-type zinc finger domain profile. 201 251 IPR000679 GO:0006355|GO:0043565
Pte2g00720 291 MobiDBLite consensus disorder prediction 1 33 - -
Pte2g00720 291 Pfam CCT motif 130 172 IPR010402 GO:0005515
Pte2g00720 291 ProSiteProfiles CCT domain profile. 130 172 IPR010402 GO:0005515
Pte2g00720 291 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 248 - -
Pte2g00720 291 SMART tify_2 64 99 IPR010399 -
Pte2g00720 291 SMART GATA_3 195 253 IPR000679 GO:0006355|GO:0043565
Pte2g00720 291 Pfam tify domain 67 98 IPR010399 -
Pte2g00720 291 Gene3D - 197 244 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00720 Pte-Chr2 5858435 5862035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00720 69 276 Tify Gene Family AT1G51600 57.339 1.23e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte2g00720 CCT 4.2e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00720 - - qsa:O6P43_012437 355.91