Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00713 ATGACAAGACAGAAGATACAAATCAAGAAGATTGACAACATTACTGCAAGGCAGGTTACCTTTTCCAAGAGGAGAAGAGGATTATTCAAGAAGGCGATGGAGCTGTCTACTCTTTGTGATGCGGAGACTGCTCTCATAGTATTTTCCTCAACTGGCAAGCTCTATGAGTACACTAGCTCAAGCATGCAGCAGGTGTTTCATAAGCATTCTCTACATTCAGATAACTCTAGCAGATGGAAACAGCCACCAATTGAGTTGCAGCTTATGAACGGTGGTGTTGATGAAAGCATGCTGAGCAAAGAGCTAGAAAGTAAGACTCGTGAACTGAGGAAGCTGATGGGAGAAGATTTGCAGGAATCTTCCTTCGAGGAATTGCAGAAGCTAGAAAAAGAACTTGGCACAGGCTTGAGACGTGTTCTGCAAGCAAAGGGTGAAAAATATGTACAAGAGATCAGAGCCCTTAAGAAGAGAGAAGGCCAACTAATGGATGTGAATCGCAAATTGAAAGAGGTTAGAGAGGGAAATAAACACGGTGAGTCACCTGGGTCGGTTTGCAGTTCCTCTGATGCTTCACAACATTGCGATATTTCTGATACTTCTCTCAAATTAGGCTTGATGAGCAATTATATATATCTATAA 639 0.421 MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAMELSTLCDAETALIVFSSTGKLYEYTSSSMQQVFHKHSLHSDNSSRWKQPPIELQLMNGGVDESMLSKELESKTRELRKLMGEDLQESSFEELQKLEKELGTGLRRVLQAKGEKYVQEIRALKKREGQLMDVNRKLKEVREGNKHGESPGSVCSSSDASQHCDISDTSLKLGLMSNYIYL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00713 212 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte2g00713 212 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pte2g00713 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte2g00713 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte2g00713 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte2g00713 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Pte2g00713 212 MobiDBLite consensus disorder prediction 173 193 - -
Pte2g00713 212 FunFam Transcription factor, MADS-box 13 83 - -
Pte2g00713 212 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Pte2g00713 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte2g00713 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte2g00713 212 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Pte2g00713 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte2g00713 212 Pfam K-box region 96 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00713 Pte-Chr2 5750860 5760398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00713 1 205 MADS-box Gene Family AT2G22540 46.835 3.12e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte2g00713 K-box 8.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00713 - - qlo:115968134 239.58