Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00700 ATGGAAAATAACGATGTGGATATGGTGGGGGCCGACAACAATGAAGCTGAATTGGATGATATGAAGAAACGCTTGAAAGAAATGGAGGATGAAGCTGTTGCTCTAAGAGAGATGCAGGCCAAGGTTGAGAAGGAGATGGATTCCTCTCAAGATCCTGCTACTGTTGCTGCAAGTCAGGCAAATAGAGAGGAAATCGATTCTCGATCAGTGTTTGTGGGCAATGTGGATTATGCATGTACTCCTGAAGAAGTACAGCAGCATTTCCAATCCTGTGGAACTGTTAACCGTGTTACAATACGTACTGACAAGTTTGGCCATCCCAAGGGATATGCTTATGTAGAATTCCTGGAAGTTGAAGCTGTTCAAGAAGCTATTCTTTTGAATGAATCTGAATTGCATGGACGCCAATTGAAGGTAACTGCCAAGCGAACTAATGTTCCTGGGATGAAGCAGTTCAGGCCCCGTCGTTCTAATCCGCTAATGGGGTTCCGAGGCAGAAACCCATATACTGTTCCTTATGGCTTTTCACCATATGAATACGGAAAAATACCAAGGTTCAGAATGCCGATGCGATACAACCCCTACTACTGA 591 0.4416 MENNDVDMVGADNNEAELDDMKKRLKEMEDEAVALREMQAKVEKEMDSSQDPATVAASQANREEIDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIRTDKFGHPKGYAYVEFLEVEAVQEAILLNESELHGRQLKVTAKRTNVPGMKQFRPRRSNPLMGFRGRNPYTVPYGFSPYEYGKIPRFRMPMRYNPYY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00700 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 162 - -
Pte2g00700 196 SUPERFAMILY RNA-binding domain, RBD 58 167 IPR035979 GO:0003676
Pte2g00700 196 Gene3D - 4 141 IPR012677 -
Pte2g00700 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 138 IPR000504 GO:0003723
Pte2g00700 196 CDD RRM_II_PABPs 69 140 - -
Pte2g00700 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 144 IPR000504 GO:0003723
Pte2g00700 196 SMART rrm1_1 69 140 IPR000504 GO:0003723
Pte2g00700 196 Coils Coil 11 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00700 Pte-Chr2 5597773 5601803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00700 69 139 Eukaryotic Initiation Factors Gene Family AT2G36660 33.333 4.69e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00700 K14396 - qsa:O6P43_031629 352.829