Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00688 ATGTCTCACTTCGGCAGGTCTGGGCCTCCTGACATCGCAGACACTTACTCTCTCCTCGTGCTCAACATTACCTTCCGTACAACTGCCGACGATTTGTTTCCTCTGTTCGACAAGTACGGTAAGGTCGTCGATGTCTTCATCCCCAAAGACCGAAGGACTGGTGAGTCAAGAGGGTTTGCTTTTGTGCGCTATAAGTACGCTGATGAGGCGCAGAAAGCTGTGGATAGATTGGATGGGAGACGTGTTGATGGTCGAGAGATATTAGTGCAGTTTGCAAAATATGGGCCAAATGCTGAGAGAATTCATAAAGGGAGGATTGTTGAATCAATCCCAAAATCCAAATACAGGTCTAGAAGTCGCAGTCCAAGGAGAAGCTACAGGAATGATTATTACAGAAACAGGGACTACAGGAGGAGAAGCCGCAGCCGAAGTTGGGATAGGTATGATCATGACAGGCATCGTCGCAGAAACAGGGATTATCGTTATCGAAGCAGGAGCCATAGTGGGAGTTCTGATGATTACAGGAGCCGAAAACGAGTGTATGATGATGATCGACGAAGTCGAAGTTTGAGTCGATCAGCAGACAGGGATGAATGCTGTTCTACTGCTCATCTTATCCTTCTACCCCCAACACTGACTGCACAAACTCCATTGTCTTCATGGTCGAGAAGCGTTCGAGGGCAATACTTGCTGGGTTTTATATGCCTCACTCTGGCAATTGTTGAACGAAGCACCAACGACCCAGAACTCTTTGTTCTCACATATACAGGTGAGCATATCGAAACTCACTTGCTGAAACTCGATTCTCAATCTTCCTTATTACCGGGCTCCAACACATTGGTGAACAGCAACACAAACTCGTCTTCTTCATCCCTCATGTCCGTTTCACCGAAAACTCAAGTTACCAATTCACCACCTGAGAATGAAAGCCAGAGCAGGAATATGGAAATTGAAACTGCAGCAAAAGATCATGGCTGA 978 0.4642 MSHFGRSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRRVDGREILVQFAKYGPNAERIHKGRIVESIPKSKYRSRSRSPRRSYRNDYYRNRDYRRRSRSRSWDRYDHDRHRRRNRDYRYRSRSHSGSSDDYRSRKRVYDDDRRSRSLSRSADRDECCSTAHLILLPPTLTAQTPLSSWSRSVRGQYLLGFICLTLAIVERSTNDPELFVLTYTGEHIETHLLKLDSQSSLLPGSNTLVNSNTNSSSSSLMSVSPKTQVTNSPPENESQSRNMEIETAAKDHG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00688 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Pte2g00688 325 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 200 - -
Pte2g00688 325 MobiDBLite consensus disorder prediction 159 193 - -
Pte2g00688 325 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Pte2g00688 325 MobiDBLite consensus disorder prediction 163 193 - -
Pte2g00688 325 MobiDBLite consensus disorder prediction 110 133 - -
Pte2g00688 325 SMART rrm1_1 17 90 IPR000504 GO:0003723
Pte2g00688 325 Gene3D - 5 103 IPR012677 -
Pte2g00688 325 CDD RRM_SRSF2_SRSF8 18 90 - -
Pte2g00688 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Pte2g00688 325 MobiDBLite consensus disorder prediction 279 315 - -
Pte2g00688 325 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Pte2g00688 325 MobiDBLite consensus disorder prediction 279 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00688 Pte-Chr2 5451532 5457396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00688 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 36.709 7.04e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00688 K12891 - mof:131163804 216.083