Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00667 ATGTCAGATGAACTGGAATACCGCTGTTTCATTGGCAATCTTTCATGGTCAACATCTGACAGAGAGCTAAAAGATACATTTGAGAAGTATGGAAAGCTTCTTGAGGCTAAGGTTGTTGTTGACAAATTTTCTGGCCGATCACGGGGATTTGGTTTTGTCACATTTGATGAAAAGCAAGCAATGGAAGAAGCTATTGAAGCAATGAACGGGATGGATTTGGATGGGCGGTCTATCACTGTTGATAAAGCTCAGCCTCAGCAAGGATCAAGTAGAGATGATGGCGGTGACCGCAATCGTGACCGTGATCGCAATCGTGACCGTGATCGTAACCGTGATTACGGTGGTGGGCGAGGATCTGGAGGAGGTGGTGAGTGCTTCAAGTGTGGAAAGCCTGGTCATTTTGCAAGAGAATGTCCAAGTGAAGGGGGAAGTGGAGGCAGGTATGGTGGTAGGGATGATAGACATGGTGGCAGTTCTGGTGCTCGTTATGGTCGAGACAGGAATGGGGATCGTTCTGGTGGCCGCAACAAGGATGGTGGAGGTGGTGGTCGTGGAGGTTTTGGATCTGATCGATCTAATCGTGATCGCTCTGGACCTTATGACCGTCGGGGATCAGGAGGGTTGCGTTCTTGA 633 0.4897 MSDELEYRCFIGNLSWSTSDRELKDTFEKYGKLLEAKVVVDKFSGRSRGFGFVTFDEKQAMEEAIEAMNGMDLDGRSITVDKAQPQQGSSRDDGGDRNRDRDRNRDRDRNRDYGGGRGSGGGGECFKCGKPGHFARECPSEGGSGGRYGGRDDRHGGSSGARYGRDRNGDRSGGRNKDGGGGGRGGFGSDRSNRDRSGPYDRRGSGGLRS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00667 210 MobiDBLite consensus disorder prediction 147 174 - -
Pte2g00667 210 CDD RRM2_NsCP33_like 8 83 - -
Pte2g00667 210 Pfam Zinc knuckle 124 140 IPR001878 GO:0003676|GO:0008270
Pte2g00667 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Pte2g00667 210 SUPERFAMILY Retrovirus zinc finger-like domains 108 143 IPR036875 GO:0003676|GO:0008270
Pte2g00667 210 FunFam Glycine-rich RNA-binding protein RZ1A 1 119 - -
Pte2g00667 210 Gene3D - 2 121 IPR012677 -
Pte2g00667 210 MobiDBLite consensus disorder prediction 80 210 - -
Pte2g00667 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 78 IPR000504 GO:0003723
Pte2g00667 210 MobiDBLite consensus disorder prediction 92 114 - -
Pte2g00667 210 SUPERFAMILY RNA-binding domain, RBD 7 115 IPR035979 GO:0003676
Pte2g00667 210 ProSiteProfiles Zinc finger CCHC-type profile. 125 140 IPR001878 GO:0003676|GO:0008270
Pte2g00667 210 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 206 - -
Pte2g00667 210 SMART rrm1_1 8 81 IPR000504 GO:0003723
Pte2g00667 210 Gene3D - 122 179 - -
Pte2g00667 210 SMART c2hcfinal6 124 140 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00667 Pte-Chr2 5239588 5244188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00667 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 39.474 3.52e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00667 - - zju:107412024 224.557