Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00649 ATGTCATTCCGTAGCATAGTTCGTGATGTTAGGGATGGTATCGGAAGCTTATCTCTGCGGAGAGTTGATGTCAGGTTGCCAGTACACCACAGAGGAAAATCTCATGGTTCACTACATGATATAAATGACCAGCCTGATGTGATTCAGAATAGTCGTTGGGCAAGTTTGCCGCCAGAACTGCTATATGATATAATTAGAAGGCTTGAAGAAAGTGAGATAGCATGGCCTGCTCGAAAGCATGTTGTTGCTTGTGCTGCAGTTTGCCGTTCATGGAGGAATATGTGCAGAGATATTGTTAAGAGCCCGGAGTTTTGTGGAAAGCTCACGTTCCCTGTGTCCCTCAAGCAGCCTGGACCACGTGATGGTACTATCCAGTGTTTCATCAAGAGAGATAAATCTAAATTGACGTACCACCTGTACCTTTGTTTGATCCCTGCTTCGCTAGTTGAGAATGGAAAGTTTCTTCTCTCTGCAAAGAGGACCCGACGAACTACTTGCACAGAATATGTTATTTCCATGGATGCTGACAATGTTTCTAGATCAAGCAGCACTTATATTGGGAAATTGAGGTCAAACTTTCTTGGTACAAAGTTCATAATTTATGACACGCAGCCTCCATATTCTTCGTCCATTGTCCCTGCTCCTGGGAAGACAAGCCGTAGATTTTATTCGAAGAAAGTGTCGCCAAAGGTCCCAACAGGGAGCTATGATATAGCACAGGTAACTTATGAATTGAATGTGCTGGGAACAAGAGGTCCGCGAAGGATGCATTGTATTATGCATACAATACCTGCCTCAGCAATGGATGTGGGTGGCACAGTCCCTGGGCAACCAGAGCTTCTTCCTCGATCTCTTGAGGACTCTTTTCGCAGCGTTTCCTTTACGAAGTCTCTTGACCATTCTGTTGAGTTCTCAAGCTCCAGATTTTCTGAGATTGGAGGATCCCACGACAGTAATGAGGATGCCAAAATCAGACCTTTGGTGCTGAAAAACAAGCCACCAAGATGGCATGAACAATTACAATGCTGGTGTCTGAACTTTCGAGGACGGGTAACTGTTGCATCTGTTAAGAACTTTCAGTTAATAGCTGCATCCCAGCCAGCAGCTGTTGCACCCGCACAGTCCCAGCCACCCCTGACAGACCACGATAAGATCATTCTGCAGTTCGGCAAGGTTGGAAAAGATATGTTTACCATGGATTATAGATATCCTCTATCAGCATTCCAGGCTTTTGCAATATGCTTAAGTAGCTTTGACACAAAATTGGCCTGTGAATAG 1278 0.4476 MSFRSIVRDVRDGIGSLSLRRVDVRLPVHHRGKSHGSLHDINDQPDVIQNSRWASLPPELLYDIIRRLEESEIAWPARKHVVACAAVCRSWRNMCRDIVKSPEFCGKLTFPVSLKQPGPRDGTIQCFIKRDKSKLTYHLYLCLIPASLVENGKFLLSAKRTRRTTCTEYVISMDADNVSRSSSTYIGKLRSNFLGTKFIIYDTQPPYSSSIVPAPGKTSRRFYSKKVSPKVPTGSYDIAQVTYELNVLGTRGPRRMHCIMHTIPASAMDVGGTVPGQPELLPRSLEDSFRSVSFTKSLDHSVEFSSSRFSEIGGSHDSNEDAKIRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAASQPAAVAPAQSQPPLTDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00649 425 SUPERFAMILY Tubby C-terminal domain-like 102 425 IPR025659 -
Pte2g00649 425 Pfam F-box domain 53 100 IPR001810 GO:0005515
Pte2g00649 425 Pfam Tub family 114 420 IPR000007 -
Pte2g00649 425 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Pte2g00649 425 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Pte2g00649 425 Gene3D Tubby Protein; Chain A 112 419 IPR025659 -
Pte2g00649 425 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Pte2g00649 425 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Pte2g00649 425 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Pte2g00649 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Pte2g00649 425 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Pte2g00649 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Pte2g00649 425 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Pte2g00649 425 FunFam Tubby-like F-box protein 48 101 - -
Pte2g00649 425 Gene3D - 47 100 - -
Pte2g00649 425 FunFam Tubby-like F-box protein 110 425 - -
Pte2g00649 425 CDD F-box_AtTLP-like 53 97 - -
Pte2g00649 425 ProSitePatterns Tub family signature 2. 410 425 IPR018066 -
Pte2g00649 425 PANTHER TUBBY-RELATED 43 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00649 Pte-Chr2 5026745 5030793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00649 1 426 TUB Transcription Factor Family AT1G76900 67.826 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte2g00649 Tub 1.7e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00649 K19600 - jre:109007061 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00649 2 5026745 5030793 Pte2g00649 2 5026745 5030793 RCT