Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00636 ATGGCGATGAACAAGTCTAGCTCTGGTCGTAGGAAAATCCCAATTGTGAAGATAGAGAAGAAAAGCCACTTACAAGTCACATTTTCTAAACGTAGAACTGGCCTTTTCAAGAAAGCTAGTGAGCTTTGTACACTTTGTGGGGTAGAAATTGCAATCATAGTTTTTTCTCCAGTTGGCAAGGCATTTTCTTTTGGCAATCCAGAAGTTGACTCTATTCTTGAGCGGTACATCAATGGAAACACCCAATTAAACTCATGCAGTCACCAAATTCTTGAGGCTCATAGAAATGCTAATGTTCAAGATTTGAACATAGAATTGACTCAAATTCTCAATCAATTAGAGTCTGAGAAGAAAGGTGAAGAGCTTGATCAGCTAAGCAAGACAAGAAGGCCGTTTTGGTTGGAGAACCCCATTGATGAACTTGGCACTCATGAACTCCAACAACTGAAGGTTGCAATGCAGGAGTTGAAGAGGAACATTGGAAACCAAGTTACCAAGATCACTATCGAGCAGACGAAGGATGCTTCTTCAGCATTTATGGGGACAAGTAATTGTGAAGATTATGAAGCATTTGGCAACAAATTTGATATGATCGATGCTCCTTCTATTGGAAATGCCTATAACATGTTTGGATATCTTTGA 642 0.3941 MAMNKSSSGRRKIPIVKIEKKSHLQVTFSKRRTGLFKKASELCTLCGVEIAIIVFSPVGKAFSFGNPEVDSILERYINGNTQLNSCSHQILEAHRNANVQDLNIELTQILNQLESEKKGEELDQLSKTRRPFWLENPIDELGTHELQQLKVAMQELKRNIGNQVTKITIEQTKDASSAFMGTSNCEDYEAFGNKFDMIDAPSIGNAYNMFGYL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00636 213 PANTHER MADS BOX PROTEIN 10 162 - -
Pte2g00636 213 Coils Coil 96 123 - -
Pte2g00636 213 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Pte2g00636 213 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Pte2g00636 213 Coils Coil 146 166 - -
Pte2g00636 213 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Pte2g00636 213 FunFam Agamous-like MADS-box protein AGL62 20 85 - -
Pte2g00636 213 Gene3D - 89 182 - -
Pte2g00636 213 CDD MADS_MEF2_like 9 80 IPR033896 GO:0000977|GO:0045944
Pte2g00636 213 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Pte2g00636 213 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Pte2g00636 213 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Pte2g00636 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Pte2g00636 213 SUPERFAMILY SRF-like 9 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00636 Pte-Chr2 4937588 4938229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00636 3 192 Type I MADS-box Gene Family AT5G60440 46.535 1.48e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte2g00636 SRF-TF 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00636 - - qsu:112040126 236.498