LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte2g00632	ATGGATTTTTATAACTATGACTTTCCTCCTCTTGTGATTGACAACGGATCCATGTCAACAAAGGCCGGATATCCAGATGAAGATACCCCAAAAGTTGTGTTCCCCACCATTGTTGGTAGACCTAAGTATGGGGACCCAGCCAACATGATAGCTTATGCAGGGGACAGAGCAGTGTGGAGAAGGGGCATCGTTGGATTGAAGTATCCGATTGAGCGTGGAATTGTCAATAATTGGGATGACATGGAGATGATTTGGCATCACACGTTTTACAATGAACTTCGTGTTAACCCTGAAGAGCACCCTGTTCTTCTTACTGACAGGTCACTCAGTCCCTTCTCCCAAAGGGAGAAAATGGTACAAATTATGTTTGAGACTTTCAATGTACCCTCCATGTATCTCGCTAATCATGCCGTTCTATCTCTCTTAACAGTTGGTAGTACGACAGGTGTTGTGGTTGATTGTGGTGATGGTATGGGCTATAGTGTTCCAGTTATCCAAGGTCGTGCTATGTCATATGCTACTCACTGGTTGAACCTTGGCGGCAGTGATTTGACAGATTACTTAGCAAAAATGTTGTACTCTAAAGGGTACAATTTCTCAAGCTCGGAGGAGGAGTTAGATCGGGTGCGTGACATGAAAGAGAAACTGTGTTATGTGGCCCTCGATTATGAAAGAGAGTTGGAATCTGCAGAGAGAAGGATATCATCTGATGTTGACAAGAACTACGAACTACCTGATGGACAGGTGATCACAATTGGAGCGGAGAGATTAAAATGCCCAGAAGTTCTCTTCCAGCCTTATCTGATCGATAAAGATGCTGATGGCATCCATGAAATCACAAACTATTCTATCAAGAAATGTGATGTTGATATCAGGAAGAAGCTCTATGATAATATTTTGCTCTGTGGTGGATCCACCTTGTTCCCTGGCTTTGCTGAGAGAATGAGCAAGGAAATCACATCCATCCTCGCTGCAAGCACGTCGAACATCAAGGTGTTTGTTCATCGAGAGAGGCCATACAGTGCGTGGGTTGGCGGATCAGTGTTAGCTTCATTGAGCAGTTTCCAAGAGATGTGGATATCCAAGGGTGAGTATGATGAATCAGGTCCGGCTATTGTCCATCAGAAATGCTTGTGTCCACTACCAAGCATAATTCGAAGTTCAAACTCGTAA	1173	0.439	MDFYNYDFPPLVIDNGSMSTKAGYPDEDTPKVVFPTIVGRPKYGDPANMIAYAGDRAVWRRGIVGLKYPIERGIVNNWDDMEMIWHHTFYNELRVNPEEHPVLLTDRSLSPFSQREKMVQIMFETFNVPSMYLANHAVLSLLTVGSTTGVVVDCGDGMGYSVPVIQGRAMSYATHWLNLGGSDLTDYLAKMLYSKGYNFSSSEEELDRVRDMKEKLCYVALDYERELESAERRISSDVDKNYELPDGQVITIGAERLKCPEVLFQPYLIDKDADGIHEITNYSIKKCDVDIRKKLYDNILLCGGSTLFPGFAERMSKEITSILAASTSNIKVFVHRERPYSAWVGGSVLASLSSFQEMWISKGEYDESGPAIVHQKCLCPLPSIIRSSNS*	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte2g00632	390	Gene3D	-	11	372	-	-
	Pte2g00632	390	SUPERFAMILY	Actin-like ATPase domain	145	378	IPR043129	-
	Pte2g00632	390	Pfam	Actin	9	377	IPR004000	-
	Pte2g00632	390	FunFam	Actin like 7B	179	273	-	-
	Pte2g00632	390	Gene3D	-	137	341	-	-
	Pte2g00632	390	Gene3D	Actin; Chain A, domain 4	179	273	-	-
	Pte2g00632	390	SUPERFAMILY	Actin-like ATPase domain	7	152	IPR043129	-
	Pte2g00632	390	CDD	NBD_sugar-kinase_HSP70_actin	11	180	-	-
	Pte2g00632	390	PANTHER	ACTIN	10	371	IPR004000	-
	Pte2g00632	390	FunFam	Actin, alpha skeletal muscle	5	154	-	-
	Pte2g00632	390	Coils	Coil	220	240	-	-
	Pte2g00632	390	SMART	actin_3	8	378	IPR004000	-
	Pte2g00632	390	ProSitePatterns	Actins signature 2.	359	367	IPR004001	-
	Pte2g00632	390	PRINTS	Actin signature	29	38	IPR004000	-
	Pte2g00632	390	PRINTS	Actin signature	83	101	IPR004000	-
	Pte2g00632	390	PRINTS	Actin signature	114	127	IPR004000	-
	Pte2g00632	390	PRINTS	Actin signature	238	254	IPR004000	-
	Pte2g00632	390	PRINTS	Actin signature	139	158	IPR004000	-
	Pte2g00632	390	FunFam	Putative actin-related protein 5	342	370	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte2g00632	Pte-Chr2	4918566	4920511	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte2g00632	7	378	Cytoskeleton Gene Families	AT5G09810	63.830	1.83e-170	479

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte2g00632	K10355		-	oeu:111369908	457.603