Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00601 ATGGAGACCCACTTCACTCACAACATCTACGAGAGACGCCCCATCATGAGGTCCAGAACTCCTGCTGTTAAATGGTTTAAGGAATGGGTTCCTCAAGATCTTGTATCAACTGGAGGGAAGTGTTCGGTCTTAAAATGGGTGTCTGCGGATAAACTGAAAGCATTGAGAGAGAAGGAAACAGAACCAACATCTCCTGAACCAGAACCAGAACCGACTACCGAAGTGCTTTTCCTTTGCAGTTTTGAAGGTTGTGGAAAGACTTTTCTAGATATTATGGCGTTAAGAAAACATTCTCACATTCATGGAGAGCGACAATATGCCTGCCACTTTGAGGGTTGCAATAAGAAATTTTTGGACAGTTCAAAGTTGAAAAGGCATTTCCTTATTCATACAGGAGAGCGAGATTTTGTGTGCCCATATGAAGGCTGTGGCAAGGCTTTCTCTCTGGATTTTAACTTGAGGTCGCACATGAAAACACATTCAATAGAGAACTATCATATCTGCCCATATCCAGATTGCGGAAAGAGATACGCTCACGAGTACAAATTGAAAAACCATATTGCTACCCATCATGAAAAGCTCGGGACAGTAGAAGTGACAAAGTATACCCCACCTGCTGTTAAACAAACTAAAAGTAGTAAGGCTTCTGCAGCGGGGGCATATGGCTCTGCGACATCTGATCGCCCATATGCTTGTCCTTATGAAGGGTGTGAAAAGGCCTATATTCATGAATATAAGCTCAACCTCCATTTGAAGAGAGAGCATCCTGGCCATATGTCTGATGAGAATGCAGAGAACCATGGTCAAGTTAATGCTGATAATGAGATGGACGAAGCAAGTGACCAAGAAGCATATCGTGTAAAGCGTTCGAATGGCAAGAACCAGAGGCAATCTAGGCAGAAACCAAACTTGAAGTTGCCCCCTGCAAAGGTTACAAAAAGGAAGGGATCGACTCCATCCCCTGCAAACTTGAATGCCTCTAAGAAACCATGGCTAGTGAAAGGAGAAATTTATGAGGAAGATAGTGAAGAAACAGAAGAAGACAGAGACAACGAAGAAGATGGGTGGAGATATGCAAGAAATAATGAGGACGAAGATGATGAAGAAACTGAATATGAAGACTGA 1125 0.4284 METHFTHNIYERRPIMRSRTPAVKWFKEWVPQDLVSTGGKCSVLKWVSADKLKALREKETEPTSPEPEPEPTTEVLFLCSFEGCGKTFLDIMALRKHSHIHGERQYACHFEGCNKKFLDSSKLKRHFLIHTGERDFVCPYEGCGKAFSLDFNLRSHMKTHSIENYHICPYPDCGKRYAHEYKLKNHIATHHEKLGTVEVTKYTPPAVKQTKSSKASAAGAYGSATSDRPYACPYEGCEKAYIHEYKLNLHLKREHPGHMSDENAENHGQVNADNEMDEASDQEAYRVKRSNGKNQRQSRQKPNLKLPPAKVTKRKGSTPSPANLNASKKPWLVKGEIYEEDSEETEEDRDNEEDGWRYARNNEDEDDEETEYED* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00601 374 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Pte2g00601 374 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Pte2g00601 374 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Pte2g00601 374 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Pte2g00601 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Pte2g00601 374 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Pte2g00601 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Pte2g00601 374 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Pte2g00601 374 Gene3D Classic Zinc Finger 77 102 - -
Pte2g00601 374 Gene3D Classic Zinc Finger 134 161 - -
Pte2g00601 374 FunFam Zinc finger transcription factor YY1 204 273 - -
Pte2g00601 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 190 IPR013087 -
Pte2g00601 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Pte2g00601 374 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 17 352 - -
Pte2g00601 374 SMART c2h2final6 77 101 IPR013087 -
Pte2g00601 374 SMART c2h2final6 230 255 IPR013087 -
Pte2g00601 374 SMART c2h2final6 136 160 IPR013087 -
Pte2g00601 374 SMART c2h2final6 106 130 IPR013087 -
Pte2g00601 374 SMART c2h2final6 166 190 IPR013087 -
Pte2g00601 374 FunFam Putative zinc finger protein 143 103 133 - -
Pte2g00601 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 260 IPR013087 -
Pte2g00601 374 FunFam Zinc finger protein 410 134 161 - -
Pte2g00601 374 SUPERFAMILY beta-beta-alpha zinc fingers 78 102 IPR036236 -
Pte2g00601 374 SUPERFAMILY beta-beta-alpha zinc fingers 169 252 IPR036236 -
Pte2g00601 374 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Pte2g00601 374 Gene3D Classic Zinc Finger 103 133 - -
Pte2g00601 374 Gene3D Classic Zinc Finger 163 193 - -
Pte2g00601 374 MobiDBLite consensus disorder prediction 271 290 - -
Pte2g00601 374 FunFam zinc finger transcription factor YY1 163 194 - -
Pte2g00601 374 Gene3D Classic Zinc Finger 205 272 - -
Pte2g00601 374 MobiDBLite consensus disorder prediction 256 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00601 Pte-Chr2 4605672 4609571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00601 8 359 C2H2 Transcription Factor Family AT4G06634 64.499 7.78e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte2g00601 zf-C2H2 0.0042 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00601 - - zju:107412546 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00601 2 4605672 4609571 Pte2g00601 2 4605672 4609571 RCT