Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00598 ATGACGAACGAATTCTTTGACACAAATATTGTTGAAGATATAGCATTGGGATTCCTAGAGGATAACTTTACCAATGGTGAGATCAACCCAACTAGTGGTAACCCATCAAATGTACACGAGACAAGACTCAGCAACTCTAGCTTGGAGAGGCATGCAGAGCAAAGCAGAAGAGAAGCAAGCGATACTGGCCAAATTAGTTCAATAATGGTCAGCAATGCAAACATGGGGATAACTTCAGAAATTCCAGCTCCTTCTCCTTTGTTATCATCAAACAACTCGACACCCTATAGGCAAGAGCCTGAAAACCCAAAATCAAAATGCCCTAATCCTGGTCGTCAAAGTCATATCATGGCTGAGAGAATGAGAAGAGAAAGACTAACCGAGAGGTTCATCGCTCTCTCTGGTCTCATCCCTGGACTAAAGAAGAATGACAAGGGTTCTGTACTGTGGGAAGCCATCAAGTATGTGAAGCAGCTTCAACGCCAAGTGAATTTGCTAGAGGAACAGAACAAGAAATTAAGTGGAGCTCATCCATCAGTTGTGTTCGTCAAGAACTCAAACGAGCGATCACTCCTCGATGAAGATATCTCAAACATTTCATCAAATTCTGACAGTACTGTTCCTGGAAACTCCAACCAAGATGTCTCGTACCAATCAATTCCTGAAGTTGAAGCAAGAGTTTTGGGCAAACAAGTAATCATACGAATCCATTGCAAAAAACACAAGGAGGTTCTCATAACTGTGCTGAGAGAAGTCGATAATTGTCATCTAGCTGTTATCATTAGCAATGTCACACCATTTGGCAACTCCTTCGTGGATATGACCATTGTTGCTCAGGTACGTATCTGCTAA 852 0.4202 MTNEFFDTNIVEDIALGFLEDNFTNGEINPTSGNPSNVHETRLSNSSLERHAEQSRREASDTGQISSIMVSNANMGITSEIPAPSPLLSSNNSTPYRQEPENPKSKCPNPGRQSHIMAERMRRERLTERFIALSGLIPGLKKNDKGSVLWEAIKYVKQLQRQVNLLEEQNKKLSGAHPSVVFVKNSNERSLLDEDISNISSNSDSTVPGNSNQDVSYQSIPEVEARVLGKQVIIRIHCKKHKEVLITVLREVDNCHLAVIISNVTPFGNSFVDMTIVAQVRIC* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00598 283 Gene3D - 109 179 IPR036638 GO:0046983
Pte2g00598 283 SMART finulus 116 165 IPR011598 GO:0046983
Pte2g00598 283 MobiDBLite consensus disorder prediction 79 100 - -
Pte2g00598 283 MobiDBLite consensus disorder prediction 26 65 - -
Pte2g00598 283 PANTHER BHLH TRANSCRIPTION FACTOR 43 280 - -
Pte2g00598 283 Pfam Helix-loop-helix DNA-binding domain 112 160 IPR011598 GO:0046983
Pte2g00598 283 MobiDBLite consensus disorder prediction 79 114 - -
Pte2g00598 283 MobiDBLite consensus disorder prediction 26 43 - -
Pte2g00598 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Pte2g00598 283 MobiDBLite consensus disorder prediction 44 58 - -
Pte2g00598 283 Coils Coil 149 176 - -
Pte2g00598 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 180 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00598 Pte-Chr2 4575850 4577659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00598 113 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 40.000 1.07e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte2g00598 HLH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00598 - - csav:115712226 167.933