Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00586 ATGCCTTGGCGCGCCTTCAATTTAAACTCTCCGTCTCTCTTCTCTCTCTCACACACAGTCTTCGCGTCTTCCTCCTTGGTTGCTACAGTACGGTGGGAAGTTTGGAAGCTGCATTCAGCTTTTGATTGTGAATTCTTTGAAACCGAAGCCGAGATATTGGGATATAGTATCATTCTCTACTCACCGCACAAAAACCTCAGTCGCAGGAAACAGTCAGTGGGAGGTAAACTTTCACTGCTTCACTGCTCCTCTGATTTCAATTCAAACAAAGGCAGTCCAGCATCCTTTTTGAAGCTACCATTCAGATACACTGGGATCTTAGCTTGTCATATTAGCATAGCAATGTTAACAAAAATTTCTCTCAGCTTAGTGGCAGGTCAAAGTCACAATATTCAGAGACCGCTGAAAGCTGAAATTGAGAAGGCTTGGCACACTCTTTCAACTCTGAAGCTTTCTAAGAGGGACTATTTCAAACCAGGAAAATCTATACTTGTTGCTTCAGAGGGTTTTCCTGAATGTGGGAGTAGAGCAGCCTCTCAAAGCACTCGTGTAAACAAAATATATTCAGGAAACCTTGAACATAATGAACTATTGCCAGGAAACAGCTATAGGACCTACAAAACTTTTACATCTTGCAATTCTGGGGCAGAAAGTGTGGGAAATGGTCAGAAATCTCAAATGCAGTTTAAGACTCCTATTGTCAATAACTATCATTCTCGAAATATTTTTAGTTCAGTGGATGATGGCATGAAGTATAGTAATCATGAAAAAGATTCTGCAAATGTTATGGCTGAAGACATTGATGACGACAGTATACTTGAGAATATTGATGTTGACCAACTGGTAGAACAGTACCAATCAACTTGTACACCTCAACCATCTATTTGTAAGCTTCCACCTATTACACCACATTTAGATAAAGATAGCATGGCAGCACAAGAAGAAGCTTGCTCCTTGCCGCCAGAATTGTGCTCAGAATGCTGTCATGGGTTTAAGATAGAACTTTGCCCTGAAGCAACCTTACATTTAAGGGAATTGAAGGATAAGCTAATTGCTGTCTCAAATCATCTGCTTGATGATGTTGACAATCTCAGTCCACAGCAGATAGCAGAGCTCCGCCAAGAAAGGTTGCAGCTTAATAATCAAATTCAGCAATTTGAATCCCATGTAAATCGTAATATCATTGATGAGGAAAGACAGAAGTCCCACTTTTCAGCAACCACTGCAACCTCCAGATCCTTCCTTATGGAAACCCCACAGACGGCAAACTTCAGGACTAATCCAATGGGAACTGGTGCCCCTAAATTTTACAATAGCCAAACATGTGGTCCTGCTCAGGCAGCTTCATTCTCTTCACCAGTTGGTTACGGCTTTTCATCAGTTCCAGTTGATAGAGAACGTCACATCCCAAAGATTATTGATGTGAACTATATTGAAGGTTCGTCTGACCGGCAATGGAGTAGTAAGAATTTCCCTTGGACAAAACAGCTTGAGGATAATAACAAGAAAGTTTTTGGGAACCACTCTTTTCGCCCCAATCAACGAGAGGTGATAAATGCTACAATGAGTGGACATGATGTTTTTGTTCTAATGCCAACTGGAGGGGGAAAAAGCCTGACTTACCAGCTTCCAGCTCTCGTTTGTCCGGGCATAACATTAGTAGTTTCTCCTCTCGTTTCACTAATTCAAGATCAGATAATGCATTTGCTACAGGCAAATATTCCTGCAACTTATTTAAGTGCCAATATGGAGTGGGCTGAACAACAAGATATACTTAGAGAACTTAGTTCTGATTACTGTAAATACAAGCTATTGTATGTTACACCAGAAAAGGTTGCCAAAAGTGATGCCCTTCTGCGCCAACTGGAGAGTTTACATAGCCGTGAGTTGCTTGCACGAGTTGTTGTTGATGAGGCTCATTGTGTTAGTCAGTGGGGGCATGATTTTAGACCAGATTATCAGGGGCTTGGTATCCTGAAACAAAAGTTTCCAAATACTCCAGTTTTGGCTTTGACAGCTACTGCAACAGCGAGTGTGAAAGAGGATGTTGTACAAGCTCTTGGTCTTGTGAATTGTGTTGTTTTCCAGCAGAGTTTTAATCGCCCAAACTTATGGTACTCAGTCATTCCTAAAACAAAGAAATGTATGGAGGACATCAACATGTTCATCAGGGAAAATCATTTTGATGAATGTGGAATAGTCTACTGCCTTTCTCGAATGGACTGTGAAAAAGTGGCTGAAAAGTTGCAGGAATTTGGGCACAAAGCAGCATTTTACCATGGTAGCATGGAACCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGCAAAGATGAGATTAACATAATTTGTGCAACAGTGGCCTTTGGAATGGGTATTAACAAACCTGATGTCCGATTTGTTATCCATCATTCACTTCCAAAATCCATTGAAGGTTACCACCAGGAGTGCGGGCGAGCTGGTAGGGACGGCCTACGGTCATCTTGTGTATTATATTACAGCTACAGTGACTATATGAGAGTCAAGCACATGATAAGTCAAGGGACAAACGAGCAAACTCCTTCCACCTCTGGATATTATCATGGCAACCCATCAAACTCAGGGAGGCTACTGGAAACAAATACCGAGAATCTTCTGAAAATGGTCAGTTATTGTGAGAATGATGTTGATTGCAGGCGTCTGTTGCAGCTTGTTCATTTTGGAGAAAAGTTTGATTCCACGACTTGTCGGAAAACATGTGACAATTGCTTGAAGACTAAATGCTATAGTGAGAAGGATGTCACAGTGATTGCAAAGCAGTTGATCGAACTTGTGAAGCTAACAGGGGAGCAATTCTCATCATCTCATATATTAGAAGTCTACAGAGGCTCATTAAACCAATTTGTCAAAAAACACAGGCACCAGAATTTGAGCCTTCATGGAGCTGGAAAACATCTCGCCAAGGGTGAAGCTTCTCGTGTGTTGCGGCATCTTGTTGTTGAAGATTTGCTTGTTGAGGATGTTAAGAAAAGTGATTTTTATGGATCTGTATCATCAATAATAAAAGTGAACAACTACAAAGTCCAAAAGCTGTCATTTGGTGGAGAGAAAGTCATATTAAGATTTCCTTCTTCTGCAAAAGCACCCAAGCTAGGCAAATTGGAAGTAACCCCAGCTAAAGGCAGCACGTCATCAGGGAAGCAAAGCCCTGCTGCACAAACGGACACTTCCCATCCTCAATCCGAAGTAGATTTGAATCTCTCTGCCAGATTGTACTCTGCTTTAAGAATGCTCCGTACTGCTCTTGTGAAAGAAGCTGGAGATGGAGTAATGGCATACCACATATTTGGGAATGCGACAATGCAGCATATGAGTAAAAGAATTCCCAGAACAAAGGAGGAGCTCCTTGAAATTAATGGCATTGGAAAGGCCAAAGTAAGCAAATATGGAGACCGGGTACTGGAAACTATTGAGGCAGCCATCAAGGAATACTACAAGCGTGACAAAAGCAGTCATGGCAGCAATAGCAGCAATGATTCTTCAAAAAGGAGAAGAGATGAAATAAGAGAGACATATGCAGACATGGAGGATGATATACTAACCAGAAGCACTGGTCGATCCAAGAAAAGGACATTGGAGAACGGAAGTGAAGATCAATCTTCTGTGAAAGCTGATTACCTTAACCAATGCACCTATGATGACCATGATTTTGATAATGATTTTGAAGACTGTGATATGGATGCATATGCTAACAGGAGCGATGAAGGAAGAGTGCTACCTCATTGGTCAACCTCTGGAACTGGAATTCAGCAATGA 3795 0.4155 MPWRAFNLNSPSLFSLSHTVFASSSLVATVRWEVWKLHSAFDCEFFETEAEILGYSIILYSPHKNLSRRKQSVGGKLSLLHCSSDFNSNKGSPASFLKLPFRYTGILACHISIAMLTKISLSLVAGQSHNIQRPLKAEIEKAWHTLSTLKLSKRDYFKPGKSILVASEGFPECGSRAASQSTRVNKIYSGNLEHNELLPGNSYRTYKTFTSCNSGAESVGNGQKSQMQFKTPIVNNYHSRNIFSSVDDGMKYSNHEKDSANVMAEDIDDDSILENIDVDQLVEQYQSTCTPQPSICKLPPITPHLDKDSMAAQEEACSLPPELCSECCHGFKIELCPEATLHLRELKDKLIAVSNHLLDDVDNLSPQQIAELRQERLQLNNQIQQFESHVNRNIIDEERQKSHFSATTATSRSFLMETPQTANFRTNPMGTGAPKFYNSQTCGPAQAASFSSPVGYGFSSVPVDRERHIPKIIDVNYIEGSSDRQWSSKNFPWTKQLEDNNKKVFGNHSFRPNQREVINATMSGHDVFVLMPTGGGKSLTYQLPALVCPGITLVVSPLVSLIQDQIMHLLQANIPATYLSANMEWAEQQDILRELSSDYCKYKLLYVTPEKVAKSDALLRQLESLHSRELLARVVVDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFQQSFNRPNLWYSVIPKTKKCMEDINMFIRENHFDECGIVYCLSRMDCEKVAEKLQEFGHKAAFYHGSMEPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYMRVKHMISQGTNEQTPSTSGYYHGNPSNSGRLLETNTENLLKMVSYCENDVDCRRLLQLVHFGEKFDSTTCRKTCDNCLKTKCYSEKDVTVIAKQLIELVKLTGEQFSSSHILEVYRGSLNQFVKKHRHQNLSLHGAGKHLAKGEASRVLRHLVVEDLLVEDVKKSDFYGSVSSIIKVNNYKVQKLSFGGEKVILRFPSSAKAPKLGKLEVTPAKGSTSSGKQSPAAQTDTSHPQSEVDLNLSARLYSALRMLRTALVKEAGDGVMAYHIFGNATMQHMSKRIPRTKEELLEINGIGKAKVSKYGDRVLETIEAAIKEYYKRDKSSHGSNSSNDSSKRRRDEIRETYADMEDDILTRSTGRSKKRTLENGSEDQSSVKADYLNQCTYDDHDFDNDFEDCDMDAYANRSDEGRVLPHWSTSGTGIQQ* 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00586 1264 Coils Coil 1171 1191 - -
Pte2g00586 1264 ProSiteProfiles Rhodanese domain profile. 733 775 IPR001763 -
Pte2g00586 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 842 IPR027417 -
Pte2g00586 1264 PANTHER DNA HELICASE RECQ FAMILY MEMBER 481 1168 - -
Pte2g00586 1264 MobiDBLite consensus disorder prediction 1159 1178 - -
Pte2g00586 1264 SMART RQC_2 926 1037 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pte2g00586 1264 Pfam RQC domain 924 1040 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pte2g00586 1264 Pfam Helicase conserved C-terminal domain 723 823 IPR001650 -
Pte2g00586 1264 FunFam ATP-dependent DNA helicase RecQ 483 700 - -
Pte2g00586 1264 Pfam HRDC domain 1082 1150 IPR002121 GO:0003676
Pte2g00586 1264 NCBIfam RecQ family ATP-dependent DNA helicase 502 977 IPR004589 GO:0004386|GO:0006310
Pte2g00586 1264 MobiDBLite consensus disorder prediction 1049 1075 - -
Pte2g00586 1264 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 632 641 IPR002464 -
Pte2g00586 1264 MobiDBLite consensus disorder prediction 1183 1213 - -
Pte2g00586 1264 Gene3D HRDC domain 1077 1166 IPR044876 -
Pte2g00586 1264 MobiDBLite consensus disorder prediction 847 866 - -
Pte2g00586 1264 CDD DEXHc_RecQ 498 700 - -
Pte2g00586 1264 SMART helicmild6 743 824 IPR001650 -
Pte2g00586 1264 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 715 865 IPR001650 -
Pte2g00586 1264 CDD SF2_C_RecQ 701 833 - -
Pte2g00586 1264 SUPERFAMILY HRDC-like 1081 1154 IPR010997 GO:0000166|GO:0044237
Pte2g00586 1264 FunFam Bloom syndrome, RecQ helicase 701 921 - -
Pte2g00586 1264 MobiDBLite consensus disorder prediction 1183 1209 - -
Pte2g00586 1264 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 518 693 IPR014001 -
Pte2g00586 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 968 IPR027417 -
Pte2g00586 1264 FunFam ATP-dependent DNA helicase Q-like 4A 1074 1160 - -
Pte2g00586 1264 Gene3D - 919 1032 IPR036388 -
Pte2g00586 1264 ProSiteProfiles HRDC domain profile. 1078 1160 IPR002121 GO:0003676
Pte2g00586 1264 Gene3D - 474 700 IPR027417 -
Pte2g00586 1264 Pfam DEAD/DEAH box helicase 512 680 IPR011545 GO:0003676|GO:0005524
Pte2g00586 1264 SMART ultradead3 506 709 IPR014001 -
Pte2g00586 1264 Coils Coil 369 389 - -
Pte2g00586 1264 Gene3D - 701 918 IPR027417 -
Pte2g00586 1264 SMART hrdc7 1078 1160 IPR002121 GO:0003676
Pte2g00586 1264 Pfam RecQ zinc-binding 835 917 IPR032284 -
Pte2g00586 1264 MobiDBLite consensus disorder prediction 1051 1075 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00586 Pte-Chr2 4491225 4500406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00586 732 847 Eukaryotic Initiation Factors Gene Family AT3G19760 23.276 4.84e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00586 K10901 - qsa:O6P43_031507 1530.77