Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00555 ATGTCTTCCACGTCTTTGATCAACCGTGGTCGTGTTGTCGTCAATGGTATGAGAAGAATGAGATCCTTCCATTACTTATGGTGCCTAACTTGTCAAAGAACTGTAAGGATAGCCTCTGCTGATCATTTATCACCGTGTCCGTATTGCTTCACTGTGCTACGTTATGAGCTTGATATGTCAAGACCAAGGCTGCAACACAGTGCAGCAAATAACTTTGAGTCCTCTTCAGCTTCCCAATTAATCGATAACTTGGCTCTCATGCTTGACCCTTCACGTCATAATCGAAATATCAATGATTTCAATAGAAGAATCCAATGGGGATCAGAAACTGATCAAGATGGTCGTTCTTGGATCACTCTTCATTTTACCAGACCACCACGTCCCCCGAGACCTGTTTCCCCAACTGAAAATATTGCAGCAGCAAACTACGCCGATTTTGATAATACACTTGATGAATTTGCAGATGGGATAGCTCAGAATGACATACCAGGTGGACCTCCTCCCGCACAGGCTTCATTCATGGAAGCCTTACCTGTGATGAAACTCACACAGGAGCATTTGAAAAATGATCCCATTTGTGCAGTGTGTAAAGACGAGTTTGAGCTTGATGGAGAGGTGACTGAGTTGCCTTGCAAGCATTTCTACCATTGTTGTTGCATTCATCCATGGCTGCGTCTCCACAATACATGTCCTGTCTGCCGCTATGAGCTACGGAATTCTTCCATGAGTGATGTTCAAACTGGAAACTTCACACCTCAGTATGGTTTTGATGAAGTGATGATGAACAGCTTTAATAGTCTGTGGAGTCATTTGAGTAATCTCAGACCTTTACGTGCGCTAATGAATTGGACTCACAGACACTTCGACACACAAAATCATTATGATGACGAAGTAAGCTCATGGTGGCGCTCTTGGTGGCTCATCTTATAG 930 0.4355 MSSTSLINRGRVVVNGMRRMRSFHYLWCLTCQRTVRIASADHLSPCPYCFTVLRYELDMSRPRLQHSAANNFESSSASQLIDNLALMLDPSRHNRNINDFNRRIQWGSETDQDGRSWITLHFTRPPRPPRPVSPTENIAAANYADFDNTLDEFADGIAQNDIPGGPPPAQASFMEALPVMKLTQEHLKNDPICAVCKDEFELDGEVTELPCKHFYHCCCIHPWLRLHNTCPVCRYELRNSSMSDVQTGNFTPQYGFDEVMMNSFNSLWSHLSNLRPLRALMNWTHRHFDTQNHYDDEVSSWWRSWWLIL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00555 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 240 IPR013083 -
Pte2g00555 309 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Pte2g00555 309 SMART ring_2 193 233 IPR001841 -
Pte2g00555 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 237 - -
Pte2g00555 309 Pfam Ring finger domain 192 234 IPR001841 -
Pte2g00555 309 FunFam E3 ubiquitin-protein ligase RING1-like 156 240 - -
Pte2g00555 309 SUPERFAMILY RING/U-box 173 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00555 Pte-Chr2 4246105 4247212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00555 9 291 C3H Transcription Factor Family AT1G68180 35.069 7.40e-44 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00555 K11982 - qsa:O6P43_012242 297.36