Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00543 ATGGCCTTTATGACCTCAACTCAAACACCAGGCCGAACTCGTACAGGGCCATCCAATGATGCCTTGTACAGGGAGTTGTGGCATGCTTGTGCTGGACCCCTTGTTAGTGTACCGCGTGAAGAGGAGCGAGTTTATTACTTTCCTCAAGGTCATATGGAGCAGCTCGAAGCATCAATGCATCAAGGGTCAGAGCAACAAATGCCTTCCTTCAATCTGCCATCCAAAATTCTTTGTAAAGTTGTCAATGCTGTTCTGCGCGCTGAACCTGAGACGGATGAAGTCTATGCACAGATCACACTGTTGCCTGAACCAAATCAAACTGAGGTTACCAGTCCAGATCCTCCTGTCCCTGAGGCTCCGAGATGCACAGTCCATTCTTTTTGCAAAACTCTCACTGCTTCGGACACAAGCACTCATGGTGGCTTTTCTGTTCTTCGGAGACATGCAGATGATTGTTTGCCACCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACCGATTTGCATGGGCAGGAATGGCACTTTCGACATATTTTTCGAGGGCAACCTAGACGCCACTTACTCACAACTGGGTGGAGTGTCTTTGTCAGCTCCAAAAAATTAGTAGCTGGGGATGCCTTTATATTTGTAAGAGGTGAGAATGGAGAGCTGCGTGTCGGAGTTAGGAGACACATGAGGCAACTAAATAACATGCCATCTTCTGTTATATCCAGTCACAGTATGCACCTTGGTGTTTTGGCCACTGCATCACATGCCATTGCTACTGGAACTCTCTTCTCTGTTTTCTATAAGCCAAGAACAAGTCGGTCAGAGTTCATTGTAAGCGTCAATAAGTACCTTGAGGCTAAAAGTCACAAACTTTCAGTTGGAATGAGGTTTAAGATGAGATTTGAGGGTGAAGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTAGGTGTTGGTGACAACAAGTCATCTGTTTGGGCTGATTCTGAGTGGAGATCTTTAAAGGTGCAATGGGATGAACCTTCAACTATAATTCGACCAGATAGGGTTTCACCATGGGAACTGGAGCCACTTGTGACCACCAATCCCCCAAACTCCCAACCTACACAAAGGAACAAACGGACAAGGCCTCCTGCTCTACCTTCATCGATGCCAGATTCCTCACCACAAGGCATGTGGAAATCATCAACTGAGCCACCCTCTTTCTCTTACTGTGATCCACAAAATGGACGAGATCTATATTTGTCACCCCACTTCAGTTCTACAGCTCCTAACTTTCTTGGCCTCGGTGGAAATAACTCTTTGGGTGCGATCGTTAGAAGTCCTGCGTGTTGGTCTAACAGAGTGGAAACCTCAAGTGGATCTTTTTCGCCAGCTGCCCAAAAAGATAATGGTGAGAAGCGTCAGGCCAATGGGGCTGGCTGTAGACTCTTTGGCATCCAGCTTTTAGAAAATTCCAACGTAGAAGAAAGTCCCACATTGGTTACAATATCTGGTAAAGTGGGGATTGATATATGTGCACCGTCTATAGATGCCGACACTGAACAGCATTCAGAGCCATCAAATATCAGATCTGATGTTCCTTCAGGAAGCTGTGATGTGGAGAAATCATGTCTTAGATCTACTCAAGAATCACAAAGCAGGCAAATAAGAAGCTGCACTAAGGTTCACATGCAAGGGATTGCGGTCGGAAGGGCTGTAGACTTGACAAGGTTTGATTCTTATGAGGATCTTCTTTGCAAACTTGAGGAGATGTTTGACATCAAGGATGAGCTCTGCGGATCCATGAAAAAATGGCAGGTTGTCTACACTGACAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGAATGAGTTCTGCAATGTTGTTAGGAAAATTTTCATTTACACTGCTGAAGAAGTGAAGAAGCTTTCACCCAAGACAGGCCTTCCTGGTCACGAAGATTGCAAGTCTAGGCAGCTAGATTCTGAAGTAGCTATCAATGCTGAAGACCAGTCATCTATTGTTGGATCTGGGTGCTGA 2028 0.4546 MAFMTSTQTPGRTRTGPSNDALYRELWHACAGPLVSVPREEERVYYFPQGHMEQLEASMHQGSEQQMPSFNLPSKILCKVVNAVLRAEPETDEVYAQITLLPEPNQTEVTSPDPPVPEAPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGQEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFVRGENGELRVGVRRHMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAKSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNKSSVWADSEWRSLKVQWDEPSTIIRPDRVSPWELEPLVTTNPPNSQPTQRNKRTRPPALPSSMPDSSPQGMWKSSTEPPSFSYCDPQNGRDLYLSPHFSSTAPNFLGLGGNNSLGAIVRSPACWSNRVETSSGSFSPAAQKDNGEKRQANGAGCRLFGIQLLENSNVEESPTLVTISGKVGIDICAPSIDADTEQHSEPSNIRSDVPSGSCDVEKSCLRSTQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDSYEDLLCKLEEMFDIKDELCGSMKKWQVVYTDNEDDMMMVGDDPWNEFCNVVRKIFIYTAEEVKKLSPKTGLPGHEDCKSRQLDSEVAINAEDQSSIVGSGC* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00543 675 ProSiteProfiles PB1 domain profile. 551 644 IPR000270 GO:0005515
Pte2g00543 675 FunFam Auxin response factor 546 640 - -
Pte2g00543 675 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte2g00543 675 Gene3D - 124 229 IPR015300 -
Pte2g00543 675 FunFam Auxin response factor 290 362 - -
Pte2g00543 675 SUPERFAMILY CAD & PB1 domains 553 628 - -
Pte2g00543 675 Gene3D - 546 640 - -
Pte2g00543 675 MobiDBLite consensus disorder prediction 355 405 - -
Pte2g00543 675 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pte2g00543 675 CDD B3_DNA 125 227 IPR003340 GO:0003677
Pte2g00543 675 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pte2g00543 675 MobiDBLite consensus disorder prediction 385 404 - -
Pte2g00543 675 Gene3D - 290 362 - -
Pte2g00543 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte2g00543 675 MobiDBLite consensus disorder prediction 358 377 - -
Pte2g00543 675 Pfam AUX/IAA family 547 641 IPR033389 -
Pte2g00543 675 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Pte2g00543 675 SMART B3_2 127 229 IPR003340 GO:0003677
Pte2g00543 675 FunFam Auxin response factor 125 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00543 Pte-Chr2 4146634 4154916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00543 16 669 B3 DNA Binding Superfamily AT1G59750 71.581 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte2g00543 AUX_IAA 4.5e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00543 K14486 - qsa:O6P43_031441 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00543 2 4146634 4154916 Pte2g00543 2 4146634 4154916 RCT