Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00539 ATGGAACTTTCAAGTCAAGAAGGGGAGATCCCAATGCCAATAAACAGTACATTTGGTGGGGGACATGGCCATGGGCACATGATTCATCATGACCCTCCACCACCTCACAACCACATCATGTCATCCTCAGCAACTCAAAATCCTTCCAATGGAATACCAATTCAAACAAGCATGGATGACCATGGACCCTACAAGAAAGTTGTCAATGTCAGGTACAGAGAATGCCTCAAGAATCATGCAGCTTCCATGGGAGGCAATGCCACCGATGGCTGTGGTGAGTTCATGCCTAGTGGAGAAGAAGGAACCATAGAAGCTTTGACCTGTTCTGCCTGCAATTGTCACAGAAACTTCCACAGAAAAGAGATTGATGGCGAGCCTTCTCCATATGACTGCCACCACAACTCACATCCCAATAGGGTAGGGAGGAAATTCGTCTTTGGCCATCATCACAAGAACATGCTGGCTCACGATGCACTTGGATACCCTACAGGCAACATTGTACCTTCAAGAACAGTAGTGCCTCCCCACCAAATGATACTGCCCTACAACATGGCGTCCCTACCTTCTGAGTCAGATGAACAAGACAATGGCGGAGGCCACGGTGGTGGCTTTGTGGCTAGACCTACTCATCTAGTGAAGAAAAGGTTCAGAACTAAGTTCACACAAGAGCAGAAAGAGAAAATGCTTAACTTTGCTGAGAAAGTTGGGTGGAAAATTCAGAAGCAAGAAGAATCTGTGGTGCAACAATTCTGCCAAGAGATTGGAGTCAAGAGAAGAGTTCTCAAGGTTTGGATGCATAACAACAAGCACAACCTAGCGAAAAAGAGCCTCCCCACTTCCTAA 843 0.465 MELSSQEGEIPMPINSTFGGGHGHGHMIHHDPPPPHNHIMSSSATQNPSNGIPIQTSMDDHGPYKKVVNVRYRECLKNHAASMGGNATDGCGEFMPSGEEGTIEALTCSACNCHRNFHRKEIDGEPSPYDCHHNSHPNRVGRKFVFGHHHKNMLAHDALGYPTGNIVPSRTVVPPHQMILPYNMASLPSESDEQDNGGGHGGGFVARPTHLVKKRFRTKFTQEQKEKMLNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKSLPTS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00539 280 NCBIfam homeobox domain, ZF-HD class 213 269 IPR006455 -
Pte2g00539 280 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Pte2g00539 280 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Pte2g00539 280 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 272 - -
Pte2g00539 280 SUPERFAMILY Homeodomain-like 210 274 IPR009057 -
Pte2g00539 280 FunFam Zinc-finger homeodomain protein 2 205 274 - -
Pte2g00539 280 Pfam ZF-HD protein dimerisation region 69 122 IPR006456 -
Pte2g00539 280 Gene3D - 206 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00539 Pte-Chr2 4102903 4104153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00539 1 276 ZF-HD Transcription Factor Family AT2G02540 47.727 4.57e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte2g00539 ZF-HD_dimer 5.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00539 - - qsa:O6P43_012111 448.743