Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00533 ATGTCAGACATGCGCGTTTCTGATCCAAGCAAGCTCCATTTGAAGAAGGAGCTCACTCAAATTCGCAAGGCTGCTCGTGTGTTAAGGGATCCTGGTACTACTTCGTCTTGGAAGTCCCCTTTGAGCTCATCAAGATCTGTGGCAGCTATTTCTTCTTCTGTTTGGAAAGGGAACTATGAGACTAGAAGATTCCACGAAAACTCTCAGCTCGAGTCTCATTTCTATTTGCCAAGTGGGGATAATAGTAATAGTGGAAGAGAGAAGAGGGTGTTCTTGTACAATTGGAAGAACCAAAAGTCTTCGAGTGAGAAAAGTGCAATGGCCAAGAATGGTGTGGATGAGGATGAAGATGATGGAGGCAATGATGAGTCTTCTCTTTTAGAAAGTTTTGAGGATAGTTTGAGTGATGCTCGTAATGGAGGTGGTGATTCCAAGAGTGATTCTTACTTGGGTGGTGAGAGTCGCTCTTCAATCTTAAGACGCAGAGATGCAAATCTTATTTTGTTGGCGAGTCCATCAGGCAAGAGGGCAATGTGGGGTAAGAAAAAGTTTAAGAAAAACAATAAAAATTTGGGCGACTTGCCAAGATATCAACAAAGGGATGCGACACTAGGTAGAAGTTTTGTAAATTCAAAAGCTTTGCTTGAGGGTCATCATTCAATCGGTTTGAGCAAGGATGAGTCAGCTGAGCAGTCTGATGAGACTGAAGAATACAGCAATTCTGAGGATTTAAGGAGAATTGCAGGGCCATCGCCTCCACTTTTGAAGCTCAAGCGCAAAAATTGGTCTCATTCCTCTGGTAAGTTTTTGAGAACTAGCATAAAAGAGGACTCTTCTTATTCTTATAGCACCCCAGCCCTGTCAACTAGTTCTTTTAATAGGTATGGTCACCAAAATCCTAGCACAATTGGCTCCTGGGATGGCACTGCAACTTCAGTGAATGATGGTGATGATGAGATAGATGATCAGTTGGATCTGCCTGGGCGGCACGGTTGTGGGATTCCTTGTTACTGGTCTAAGAGGAGTACTCCTAAGCACAAAGGCCTCTATGGGAGTTGTTATTCACCTTCTCTGTCAGATACTATAAGGAGAAAGGGAAGTAGCATACTTTGTGGAAGTCAAACTACCAATTCTAGGCGCCGCAGATCAGCACCAAGCTCTAACAAGCGTAGAACTGCTTCAAGAAGTGCTCAAGGTGTTTTGCCATTGCTTACAAAAAGTGCTGATGGCAGGGGTTCATCTTTAGGCACTGGAGAGAGTGATGATGAACTCTCAACAAACTTTGGGGAACTTCAACTAGAGGCTTTGAGCAGACTGGATGGAAGAAGGTGGTCTACGAGCTGCCGGAGTGAAGGATTAGATATCATAGCTCTAAATGGGGAAAGGGATGACGATGGTACACCAGATAATATTAGAAGTTTCAGTCAAAAGTATAAACCTATGTTTTTTAGTGAATTGGTTGGGCAGAATATTGTGGTCCAGTCACTTATTAATGCTGTTGCAAGGGCTCGGATTGCAGCCGTATATCTTTTTCAAGGTCCCCGTGGTACTGGAAAAACATCGACAGCAAGAATATTTGCTGCTGCTCTCAATTGTATGGCTCCCGATGAAAATAAGCCATGTGGTTACTGTATGGAATGTACTGAATTCATTTCTGGAAAAAGCAAGGATCTGATAGAAGTTGATGGAACCAATAAAAAAGGTATTGATAGAGTTAGACATCTATTAAAAAAATTGGCAGTGGTCTCATCAACAAGTTCCTCAAGATTTTTGGTTTTTGTTATTGAAGAGTGTCACCTGCTGTCCTCTAAGACATGGCTGGCATTACTAAAATTTCTAGAAGAACCACCACGACGAGTTGTGTTTATATTTATTACCACTGATCTTGACAATGTTCCACGTACAATACAATCCCGGTGTCAAAAGTATATATTCAATAAAATCAAAGATGGCGATATTATTGCTAGGTTGAGAAAAATCTCTGCTGATGAGAGCTTAGATGTTGAGCAAAATGCACTGGAGTTGATTGCTTTGAACGCAGATGGTTCGCTTAGAGATGCAGAAACCATGTTGGAACAGTTAAGCTTGCTCGGTAAAAGAGTCACTACATCTCTGGTTAATGAACTTGTAGGTGTTGTCTCGGATGAAAAATTATTGGAACTTCTTGAGTTAGCTATGTCATCCGACACAGCAGAGACAGTAAAAAGAGCTAGAGAGCTGATGGACTCTGGAGTTGATCCAATGGTCTTGATGTCTCAATTGGCCAGTCTCATTATGGATATTATTGCGGGAACATACAATATGTCCAACAACAAATGTGGAGATCTATTATTTGGTGGACGAGGTTTGACCGAATCTGAAATAGAGAGGTTAAAGCATGCCTTGAAGCTTCTGTCAGAGGCCGAGAAACAGTTGAGAATTTCAACTGAGCGTTCAACATGGTTCACTGCAACACTGTTACAGCTTGGTTCAATGCCTTCTCCAGATGCTTCTCTATCAAGCAGCAGTAGAAGGCAGAGCTGCAAGACTGAGAATGACCCATCAAGTGCTTCAAAAGAAGCTGCTGGAGGAAGACAGAAGGCTGGTGTTCAGAGTATGCCACGTCAATCAACTTCCCCAGCATCAATGCAGAAAGTGTCAAATGTAAACTTTAACCATCAGGGGAATTTACTATCAAAATCTGATGGTTTTGGACCAAAATCTAGGCCAGCAACTAGCCCAGTTATTGATGGTGGATCTTCAGCTGTGTCTGGTGATGATAGTTTAGTTCAAAACATGTATAGATGCATTGATATGGACAAATTGTGTGACATATGGCCACTTTGTATTGAAAGGTGTCATTCAAAGACACTGAGGCAATTGCTACATACCCATGGAAAGCTTGTGTCCATATGTGAAGTTGAAGGTATTATGGTTGCATATGTCGCATTTGAGGATGTAGATATTAAACTTAGGGCCGAAAGGTTTTTGAGCAGCATTACAAATTCCATGGAAATGATACTTAGACGCAACGTGGATGTTAGAATAATACATTTGCCAAGAGGTGAAGCTTCAGCAAATGGTGAAAATGTAACCAATCTTCACAGTCTGAAACAAGCAGAATCAACCATGGGAAATGGAAAGGAATTACAAGTGTACGTGAGTGGAAAAGATGCTCATCCTAGTTTTCCTTCTTTTCGGGGTGGAAAGTTTCCATCAGGCGGCGATTCATCTGAACTTTGGGCTGAAGGTATTTCACATACCCTCGGTCCAAGAGATAGGAAGCAAGATATACCCATGCAGAGAATAGAATCAATAATTCTCGAGCAAAGACTTGAAACTGCCTGGTTGCAGGCTGTAGAGAAGGGAACCCCTGGATCATTGAATCGTTTGAGGCCTGAGAAGAATCAGGTCCTTCCTCAGGATGGTGTCTACTATAAAGATCAAATGGAGTCCATGGGATCGGCAAGGTTTTCTTCACAGCATTGGGACAATGAACTTAATCATGACCTTAAGGTCTTAAATGGTAACAGTGGGAACATCCTACCGAAGGACAAGATTGGCAGAAGAGCTAACCGCATTCCCATGTCCCCAAGTTTATTGCACAACAACAGTTTGGCTACAAGCTCTAGCAAGGATAACCGGGGATATGAATCAAGCTCAGGAACTGGAGGATGCAGTGGACTTTTCTGTTGGAATAATTCTAAGCCTAGTAAAATGGAAAAGGTGAAAAGAACCCCTGTTGGGAGACATAGAAGTGGGCGCTTTTCATTGTTTGGTGAGTGTGGTGGAAAGCCGAAGAACAAGCAGAGCAGGGAGCTCAGATGA 3807 0.4229 MSDMRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAISSSVWKGNYETRRFHENSQLESHFYLPSGDNSNSGREKRVFLYNWKNQKSSSEKSAMAKNGVDEDEDDGGNDESSLLESFEDSLSDARNGGGDSKSDSYLGGESRSSILRRRDANLILLASPSGKRAMWGKKKFKKNNKNLGDLPRYQQRDATLGRSFVNSKALLEGHHSIGLSKDESAEQSDETEEYSNSEDLRRIAGPSPPLLKLKRKNWSHSSGKFLRTSIKEDSSYSYSTPALSTSSFNRYGHQNPSTIGSWDGTATSVNDGDDEIDDQLDLPGRHGCGIPCYWSKRSTPKHKGLYGSCYSPSLSDTIRRKGSSILCGSQTTNSRRRRSAPSSNKRRTASRSAQGVLPLLTKSADGRGSSLGTGESDDELSTNFGELQLEALSRLDGRRWSTSCRSEGLDIIALNGERDDDGTPDNIRSFSQKYKPMFFSELVGQNIVVQSLINAVARARIAAVYLFQGPRGTGKTSTARIFAAALNCMAPDENKPCGYCMECTEFISGKSKDLIEVDGTNKKGIDRVRHLLKKLAVVSSTSSSRFLVFVIEECHLLSSKTWLALLKFLEEPPRRVVFIFITTDLDNVPRTIQSRCQKYIFNKIKDGDIIARLRKISADESLDVEQNALELIALNADGSLRDAETMLEQLSLLGKRVTTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYNMSNNKCGDLLFGGRGLTESEIERLKHALKLLSEAEKQLRISTERSTWFTATLLQLGSMPSPDASLSSSSRRQSCKTENDPSSASKEAAGGRQKAGVQSMPRQSTSPASMQKVSNVNFNHQGNLLSKSDGFGPKSRPATSPVIDGGSSAVSGDDSLVQNMYRCIDMDKLCDIWPLCIERCHSKTLRQLLHTHGKLVSICEVEGIMVAYVAFEDVDIKLRAERFLSSITNSMEMILRRNVDVRIIHLPRGEASANGENVTNLHSLKQAESTMGNGKELQVYVSGKDAHPSFPSFRGGKFPSGGDSSELWAEGISHTLGPRDRKQDIPMQRIESIILEQRLETAWLQAVEKGTPGSLNRLRPEKNQVLPQDGVYYKDQMESMGSARFSSQHWDNELNHDLKVLNGNSGNILPKDKIGRRANRIPMSPSLLHNNSLATSSSKDNRGYESSSGTGGCSGLFCWNNSKPSKMEKVKRTPVGRHRSGRFSLFGECGGKPKNKQSRELR* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00533 1268 FunFam DNA polymerase III subunit gamma/tau 649 711 - -
Pte2g00533 1268 NCBIfam DNA polymerase III subunit gamma/tau 473 822 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pte2g00533 1268 MobiDBLite consensus disorder prediction 1232 1268 - -
Pte2g00533 1268 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 476 878 - -
Pte2g00533 1268 MobiDBLite consensus disorder prediction 25 48 - -
Pte2g00533 1268 MobiDBLite consensus disorder prediction 102 155 - -
Pte2g00533 1268 Gene3D - 650 711 - -
Pte2g00533 1268 SMART AAA_5 505 672 IPR003593 GO:0016887
Pte2g00533 1268 MobiDBLite consensus disorder prediction 221 250 - -
Pte2g00533 1268 Pfam DNA polymerase III subunits gamma and tau domain III 701 763 IPR022754 GO:0003887
Pte2g00533 1268 FunFam DNA polymerase III subunit gamma/tau 469 647 - -
Pte2g00533 1268 CDD AAA 509 645 - -
Pte2g00533 1268 CDD HLD_clamp_pol_III_gamma_tau 648 711 IPR045085 -
Pte2g00533 1268 MobiDBLite consensus disorder prediction 1190 1216 - -
Pte2g00533 1268 SUPERFAMILY post-AAA+ oligomerization domain-like 719 820 IPR008921 GO:0003677|GO:0006260
Pte2g00533 1268 Gene3D - 466 646 IPR027417 -
Pte2g00533 1268 MobiDBLite consensus disorder prediction 826 852 - -
Pte2g00533 1268 MobiDBLite consensus disorder prediction 369 423 - -
Pte2g00533 1268 MobiDBLite consensus disorder prediction 892 915 - -
Pte2g00533 1268 Pfam DNA polymerase III, delta subunit 488 648 - -
Pte2g00533 1268 MobiDBLite consensus disorder prediction 826 876 - -
Pte2g00533 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 695 IPR027417 -
Pte2g00533 1268 MobiDBLite consensus disorder prediction 1188 1216 - -
Pte2g00533 1268 Coils Coil 791 811 - -
Pte2g00533 1268 MobiDBLite consensus disorder prediction 32 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00533 Pte-Chr2 4061434 4067937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00533 476 763 Core DNA Replication Machinery Family AT1G21690 24.916 1.26e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00533 - - qsa:O6P43_012104 1654.03