Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00532 ATGGAAGGTGTCCCGCACCCAATACCGCGGACAGTGGAGGAGGTATTCAGTGACTTCAAGGGTAGACGTGCCGGCTTGATCAAAGCACTCACCACTGAGGTCGAAAAGTTCTATCAGCAGTGTGATCCTGAGAAGGAGAATTTGTGTCTTTATGGATTTCCAAATGAGACGTGGGAAGTTAACCTGCCTGTTGAAGAGGTGCCTCCTGAGCTTCCAGAGCCAGCCTTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAGGACTGGCTATCACTGGTTGCAGTTCACAGTGACTCTTGGTTGCTTTCAGTTGCATTCTATTTTGGTGCACGCTTTGGTTTTGGGAAGAATGAAAGGAAGAGACTTTTCCAGATGATAAATGACCTTCCTACGATATTTGAAGTCGTCACTGGTGCTAACAAGCAGTCAAGGGAATTAGCTGCACAAAACAATGGTAGCAAAAGCAAATCAAGTGGCAAGCCCCGCCAAGCAGATTCTCAGCCGAAGGCAGTGGTGAAGATGTCTGCACCACCCAAAGATGAAGATGAGAGTGGTGACGATGGGGAGGAAGATGATGAACAAGGTGCCACTTGTGGAGCATGTGGAGACAGCTATGCAAATGACGAGTTCTGGATTTGCTGTGATGTATGTGAAAAATGGTTCCATGGGAAATGTGTAAAGATAACTCCTGCAAAGGCTGAGCATATTAAGCAGTATAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGCATTATAA 762 0.4659 MEGVPHPIPRTVEEVFSDFKGRRAGLIKALTTEVEKFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGANKQSRELAAQNNGSKSKSSGKPRQADSQPKAVVKMSAPPKDEDESGDDGEEDDEQGATCGACGDSYANDEFWICCDVCEKWFHGKCVKITPAKAEHIKQYKCPSCSNKRARAL* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00532 253 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Pte2g00532 253 MobiDBLite consensus disorder prediction 146 165 - -
Pte2g00532 253 Pfam PHD-finger 199 248 IPR019787 -
Pte2g00532 253 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Pte2g00532 253 MobiDBLite consensus disorder prediction 146 194 - -
Pte2g00532 253 FunFam PHD finger alfin-like protein 191 247 - -
Pte2g00532 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Pte2g00532 253 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Pte2g00532 253 PANTHER CPG BINDING PROTEIN 9 251 IPR045104 GO:0006355|GO:0042393
Pte2g00532 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pte2g00532 253 SMART PHD_3 198 246 IPR001965 -
Pte2g00532 253 CDD PHD_AL_plant 199 248 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00532 Pte-Chr2 4048484 4052760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00532 1 249 Alfin-like Transcription Factor Family AT1G14510 78.800 4.06e-129 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte2g00532 Alfin 1.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00532 K26274 - gmx:100807826 431.795