Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00531 ATGAGCAAAAACAACGAAGACTCAACCATCGGAACATCTACAAACACCAATGACGTCAATCGCAAACCAGTTGATGAGCATGAACATGACATGGTTATGCCTGGATTTCGCTTCCACCCCACTGAAGAAGAGCTTGTAGAGTTCTACCTTCGCCGTAAGGTTGAGGGCAAGCGTTTCAATGTTGAACTTATCACTTTCCTTGATCTTTATCGCTATGACCCATGGGAACTTCCTGCCTTGGCAGCGATTGGAGAGAAGGAATGGTTCTTCTATGTTCCAAGAGACAGGAAGTATAGAAATGGTGACCGTCCCAATAGAGTTACAACTTCTGGGTACTGGAAGGCAACTGGAGCAGATAGAATGATCAAAAGTGAGAACTTCAGGTCGATTGGATTGAAGAAAACCCTAGTTTTCTATACTGGGAAAGCACCTAAAGGTATCCGAACCAGTTGGATTATGACTGAGTACCGTTTGCCTCAGCATGAGACTGAGAGACACCAAAAGGCAGAAATGTCACTTTGCCGTGTGTACAAAAGAGCTGGAGTAGAGGACCATCCCTCACTCCCTCGTGTCCTCCTATCTAGGCCATCCTCATCAAGAACAGTCCAACCTGATAAAAAGCACGATGACATTCTTCGTCACAACGTGGGTTTTGGTGGACAACCCCAAAAAACCGACAAGGTAATAGAGAAAATGGATGAAAATTCGTGTTCAGATCTAACAACAGCTCTTGGGTTTTCCAAGCATAACAGTTCTGCTTTCCGAGTACCAGCTTCAGTAAGCACCCCAATGGGATTAACGTCTATGGATGGGGATGGCATGCTTATGCAGCAACCGAAGCACGCAGTTGGATCATCTCGTGTCCCCACGAATGGCGCCTTATTAATTGGGAATTCTTCTGTTTCTTCTACTATCACGGACATGGATGATTACCATAGATTAGTGGATTACCAACAGTACTATAATGTCAACGATCATCACAACCAGTTGTCTAATCCGCTAATGCAACAACAACCTTTGGCTCTTAATGTGCTACCAAGTTCACTTCCAACAACTTTCTCGGACAGACTGTGGGAGTGGAATTCTGTGCATGACGCCAACCGAGACTACAGCAATATGCCATTCAAGTAA 1131 0.4474 MSKNNEDSTIGTSTNTNDVNRKPVDEHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIKSENFRSIGLKKTLVFYTGKAPKGIRTSWIMTEYRLPQHETERHQKAEMSLCRVYKRAGVEDHPSLPRVLLSRPSSSRTVQPDKKHDDILRHNVGFGGQPQKTDKVIEKMDENSCSDLTTALGFSKHNSSAFRVPASVSTPMGLTSMDGDGMLMQQPKHAVGSSRVPTNGALLIGNSSVSSTITDMDDYHRLVDYQQYYNVNDHHNQLSNPLMQQQPLALNVLPSSLPTTFSDRLWEWNSVHDANRDYSNMPFK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00531 376 SUPERFAMILY NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Pte2g00531 376 FunFam NAC domain-containing protein 35 41 182 - -
Pte2g00531 376 ProSiteProfiles NAC domain profile. 32 179 IPR003441 GO:0003677|GO:0006355
Pte2g00531 376 Pfam No apical meristem (NAM) protein 34 158 IPR003441 GO:0003677|GO:0006355
Pte2g00531 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 29 277 - -
Pte2g00531 376 Gene3D NAC domain 41 182 IPR036093 GO:0003677|GO:0006355
Pte2g00531 376 MobiDBLite consensus disorder prediction 1 19 - -
Pte2g00531 376 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00531 Pte-Chr2 4041201 4043279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00531 31 195 NAC Transcription Factor Family AT2G02450 88.485 4.61e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte2g00531 NAM 5.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00531 - - qsa:O6P43_012101 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00531 2 4041201 4043279 Pte2g00531 2 4041201 4043279 RCT