Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00478 ATGAGAAGATCACAAAAGCACCAAAACTCTGACAATATATCTGGGTTGTTTCACCAGCCTATGCAAAATATTGACTACTACCATTTATCTCAATTCCAAATTCTGAAAAATAATGTATCTACGGATTTCAGCAGCCACGGATCAAATTTTACTTTTGCAAACTGTAAGGAACAGTACTTCACTCTGGAGTCATCTTCAGCAACTCCGGGACCCAGTGGCTGCAATTCCCATTCTGGCCCAACTTTGTCATCCAGGGGGGGTCCATTTTCCCCTCAAGTTTCTCAGTCATGCTCGTCAGGTCCACATCATTCCTCTAATAACGGCTATGGATCGCCAATGAGTGGATCCTCAAGTGCTGATGACAGCAATGAATGGAAGCATAAACTGAGGGAACTGGAGATTTCTCTACTGGGGCCTGAATCTGACATTGTCGACAGTTGCTTTTGCTGCTTCAAAAGTGATTTCCACCAAGGTACATCTAATTGGGATGAAATGATGGCAATGATACCCATGTTAGACTTAAAACAGGTGCTCATTGCCTGTGCTCAAGCAGTTTCTGATGCAGATACAACAATGGCACTATTCTTGATGGAAGTGTTGGGACAGATGGTGTCAGTTTCTGGAGATCCAATGCAGCGTTTAGGTGCTTACTTTCTGGAAGGTCTAAGAGCAAGATTAGAATCATCAGGGAGTTCAATCTACAAAGCCCTAAAGTGTGAAGAACCTACTAGCTCAGAACTGATGAGTTACATGCATATCCTCTTCCAGATTTGCCCATACTGGAAGTTTGCTTACACATCTGCAAATACTGTCATCCGAGAAGCAATGACCAACGAGTCCAGAATTCATATTATCGATTTCCAGATTGCGCAGGGTACTCAGTGGATGTTCTTAATGCATGCTCTTGCTGGTCGTTTTGGCGGTCCTCCAAGCATCCGCATCACTGGTATTGATGATTCGCAATCATTTCATGCTCGTGGCGGAGGACTTCATATTGTAGGAGAAAGGTTAGCCAAAGTTGCCGAGTCATATGGAATCCCATTTGAATTCCACAGTGCTGCCATCTCTGGTTGTAAGATAGATCTTGAAAATCTCAGGATTCGGCATGGAGAAGAAGCTTTGGCTGTAAATTTTCCATACGTATTGCACCATATGCCTGATGAGAGTGTGACTATGGAGAATCACAGAGATAGACTATTGAGGTCGGTCAAGAGTTTGTCACCGAAAGTTGTGACCCTGGTTGAGCAAGAGTCAAACACCAACACTTCACCATTCTTCCAAAGGTTTTGTGAAACACTGGATTATTATACAGCCATGTTTGAATCCATTGATGTAGCACGTTCTAGAGATGATAAAAATAGGATCAGTGCAGAACAGCAGTGTGTGGCTCGTGACATAGTGAACATGATTGCTTGTGAGGGAGCAGAAAGAGTTGAACGCCATGAACTTTTAGGTAAGTGGAGGTTAAGATTTAGCATGGCTGGTTTTGCACCATATCCTTTAACCCCATCCGTGACAAATTCAGTCAAGGAAATGTTGAGGGGGTACAATGAGAATTACAGAGTTCAGGAGAGAGATGGAGCGCTCTATCTAGGCTGGAAAGGAAGAGATATGGTCACTTCTTCTGCATGGAGATGA 1638 0.4335 MRRSQKHQNSDNISGLFHQPMQNIDYYHLSQFQILKNNVSTDFSSHGSNFTFANCKEQYFTLESSSATPGPSGCNSHSGPTLSSRGGPFSPQVSQSCSSGPHHSSNNGYGSPMSGSSSADDSNEWKHKLRELEISLLGPESDIVDSCFCCFKSDFHQGTSNWDEMMAMIPMLDLKQVLIACAQAVSDADTTMALFLMEVLGQMVSVSGDPMQRLGAYFLEGLRARLESSGSSIYKALKCEEPTSSELMSYMHILFQICPYWKFAYTSANTVIREAMTNESRIHIIDFQIAQGTQWMFLMHALAGRFGGPPSIRITGIDDSQSFHARGGGLHIVGERLAKVAESYGIPFEFHSAAISGCKIDLENLRIRHGEEALAVNFPYVLHHMPDESVTMENHRDRLLRSVKSLSPKVVTLVEQESNTNTSPFFQRFCETLDYYTAMFESIDVARSRDDKNRISAEQQCVARDIVNMIACEGAERVERHELLGKWRLRFSMAGFAPYPLTPSVTNSVKEMLRGYNENYRVQERDGALYLGWKGRDMVTSSAWR* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00478 545 Pfam GRAS domain family 174 545 IPR005202 -
Pte2g00478 545 MobiDBLite consensus disorder prediction 66 122 - -
Pte2g00478 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 118 539 IPR005202 -
Pte2g00478 545 MobiDBLite consensus disorder prediction 66 120 - -
Pte2g00478 545 ProSiteProfiles GRAS family profile. 165 545 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00478 Pte-Chr2 3672653 3684498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00478 1 545 GRAS Transcription Factor Family AT4G17230 58.212 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte2g00478 GRAS 1.6e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g00478 - - qsa:O6P43_012018 761.14