Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g00476 ATGGAAATGGAACCTGGTAAACTTTTCATCGGTGGGATTTCATGGGACACGAACGAAGACCGCCTAAAACAGTATTTTGAAATGTTTGGAGATGTGAGGGAAGCTGTGATAATGAAGGATAGGCTCACTGGTCGTGCACGTGGGTTTGGATTCGTTGTTTATGCTGATCCTGCTGTTGCAGATCAAGTGGTTATGGAAAAGCATGTCATTGATGGCAGAACTGTTGAAGCAAAGAAAGCTGTTCCTAGAGATGATCAGAACAATCAGACCAAAAACAACGGCAGCATCCATGGATCACCAGGTCCTAACCGTACAAAGAAGATTTTTGTGGGAGGTTTAGCTTCCACTGTCACTGAGAGTGATTTTAAGAATTATTTCGATCAGTTTGGAACAATTACAGATGTTGTTGTGATGTATGACCATAATACCCAGAGGCCAAGGGGTTTTGGATTCATTACCTTTGAGTCTGAGGAAGCTGTGGAGAAAGTTCTGTACAAAACCTTTCACGAACTCAATGGTAAAATGGTGGAGGTTAAGCGTGCTGTCCCAAAGGAACATTGTCCTGGTGCAATGAGGGGTCAATTAGGTGGTTATAACTATGGTCTAAATAGAGTTAACAACTTTCTCAATGGTTACATTCAAGGATATAATCCAAGTTTAGTTGGAGGACATGGGATGGGAATGGATGGCAGGATTAGTAGTTCTCTCTTTCTTGGTCGGAACGGATATCCATCTCCTGGTCCTAATTATGGAATTGGACTCAATTTTGAGCCAGCCTTGAGTCAGAGCACAAATGCAAACTTTATTGCTGACCATGCTATTGGACGACAACTGAATTCTCTGTTCAATGGAAATTCGAACAGATACAGCACAGCCATAGGATATAATAGTGCTCTAAATGGAGGTAACAATTCAACCATAAGTTCGAATATTCAGAATCTGTGGGGAAATGAGGGCCTTACAAATGTCACTAGGTCCCCTAACTCTGGATCTCTTGTGGGATATGGCAATGATTCAACCACAGGTGCTTTTGGCAGCATAGGAACACCGTGGCGTTCCACAAGAAATTCAGGGCAAGTAGGAGTTGGCGATTCTCCCTACAGTTTGCATAATGGTATTTATGGCAATGGAGATATGAGTTTGAGCTTAGGTTCTGTAGGATATGGAAGGAATAATGGAGGCAATGGGGCACACTTGTCTCGTACTGCATCTAGTGGCAACTACAGTAGGGACTATACAGATGATTTTGATCTTGGGTCATTTCATGGAAAATCTGTATGGTTATCTTCACCTCTAGAACTGGAGAACTCCGCTGTACTTGGTAATGGTTTTGGAAATGTGACTTCAGATTTTATGGGTAAAAGGTCCACTAGTTTGATCGGGACTTAG 1389 0.4226 MEMEPGKLFIGGISWDTNEDRLKQYFEMFGDVREAVIMKDRLTGRARGFGFVVYADPAVADQVVMEKHVIDGRTVEAKKAVPRDDQNNQTKNNGSIHGSPGPNRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFESEEAVEKVLYKTFHELNGKMVEVKRAVPKEHCPGAMRGQLGGYNYGLNRVNNFLNGYIQGYNPSLVGGHGMGMDGRISSSLFLGRNGYPSPGPNYGIGLNFEPALSQSTNANFIADHAIGRQLNSLFNGNSNRYSTAIGYNSALNGGNNSTISSNIQNLWGNEGLTNVTRSPNSGSLVGYGNDSTTGAFGSIGTPWRSTRNSGQVGVGDSPYSLHNGIYGNGDMSLSLGSVGYGRNNGGNGAHLSRTASSGNYSRDYTDDFDLGSFHGKSVWLSSPLELENSAVLGNGFGNVTSDFMGKRSTSLIGT* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g00476 462 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 457 - -
Pte2g00476 462 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte2g00476 462 MobiDBLite consensus disorder prediction 75 104 - -
Pte2g00476 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Pte2g00476 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Pte2g00476 462 MobiDBLite consensus disorder prediction 86 100 - -
Pte2g00476 462 CDD RRM2_Hrp1p 107 184 - -
Pte2g00476 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte2g00476 462 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Pte2g00476 462 SUPERFAMILY RNA-binding domain, RBD 102 202 IPR035979 GO:0003676
Pte2g00476 462 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pte2g00476 462 Gene3D - 5 85 IPR012677 -
Pte2g00476 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pte2g00476 462 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte2g00476 462 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pte2g00476 462 Gene3D - 86 201 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g00476 Pte-Chr2 3659122 3662636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g00476 6 180 Eukaryotic Initiation Factors Gene Family AT2G23350 24.000 1.67e-07 52.0